1A0H
THE X-RAY CRYSTAL STRUCTURE OF PPACK-MEIZOTHROMBIN DESF1: KRINGLE/THROMBIN AND CARBOHYDRATE/KRINGLE/THROMBIN INTERACTIONS AND LOCATION OF THE LINKER CHAIN
- PDB DOI: https://doi.org/10.2210/pdb1A0H/pdb
- Classification: HYDROLASE/HYDROLASE INHIBITOR
- Organism(s): Bos taurus
- Mutation(s): No 
- Deposited: 1997-11-30 Released: 1998-06-17 
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 3.20 Å
- R-Value Free: 0.242 
- R-Value Work: 0.205 
- R-Value Observed: 0.205 
This is version 2.1 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
MEIZOTHROMBIN | A, C [auth D] | 159 | Bos taurus | Mutation(s): 0  EC: 3.4.21.5 | |
UniProt | |||||
Find proteins for P00735 (Bos taurus) Explore P00735  Go to UniProtKB:  P00735 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P00735 | ||||
Sequence AnnotationsExpand | |||||
|
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
MEIZOTHROMBIN | B, D [auth E] | 259 | Bos taurus | Mutation(s): 0  EC: 3.4.21.5 | |
UniProt | |||||
Find proteins for P00735 (Bos taurus) Explore P00735  Go to UniProtKB:  P00735 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P00735 | ||||
Sequence AnnotationsExpand | |||||
|
Oligosaccharides
Small Molecules
Ligands 1 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
0G6 Query on 0G6 | G [auth B], H [auth E] | D-phenylalanyl-N-[(2S,3S)-6-{[amino(iminio)methyl]amino}-1-chloro-2-hydroxyhexan-3-yl]-L-prolinamide C21 H34 Cl N6 O3 DVFLYEYCMMLBTQ-VSZNYVQBSA-O |
Biologically Interesting Molecules (External Reference) 1 Unique
Entity ID: 4 | |||||
---|---|---|---|---|---|
ID | Chains | Name | Type/Class | 2D Diagram | 3D Interactions |
PRD_000020 (0G6) Query on PRD_000020 | G [auth B], H [auth E] | D-Phe-Pro-Arg-CH2Cl | Peptide-like / Inhibitor |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 3.20 Å
- R-Value Free: 0.242 
- R-Value Work: 0.205 
- R-Value Observed: 0.205 
- Space Group: P 41 21 2
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 186.15 | α = 90 |
b = 186.15 | β = 90 |
c = 120.29 | γ = 90 |
Software Name | Purpose |
---|---|
XENGEN | data collection |
SCALEK | data reduction |
X-PLOR | model building |
X-PLOR | refinement |
XENGEN | data reduction |
SCALEK | data scaling |
X-PLOR | phasing |
Entry History 
Deposition Data
- Released Date: 1998-06-17  Deposition Author(s): Martin, P.D., Malkowski, M.G., Box, J., Esmon, C.T., Edwards, B.F.P.
Revision History (Full details and data files)
- Version 1.0: 1998-06-17
Type: Initial release - Version 1.1: 2008-03-24
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Atomic model, Database references, Derived calculations, Non-polymer description, Structure summary, Version format compliance - Version 1.3: 2011-11-16
Changes: Atomic model - Version 1.4: 2013-02-27
Changes: Other - Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Atomic model, Data collection, Database references, Derived calculations, Other, Structure summary - Version 2.1: 2024-04-03
Changes: Data collection, Database references, Refinement description, Structure summary