16VP | pdb_000016vp

CONSERVED CORE OF THE HERPES SIMPLEX VIRUS TRANSCRIPTIONAL REGULATORY PROTEIN VP16

• PDB DOI: https://doi.org/10.2210/pdb16VP/pdb

• Classification: TRANSCRIPTIONAL REGULATORY PROTEIN
• Organism(s): Human alphaherpesvirus 1
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 1999-02-11 Released: 1999-07-28 
• Deposition Author(s): Liu, Y., Gong, W., Huang, C.C., Herr, W., Cheng, X.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.10 Å
• R-Value Free: 
  0.260 (Depositor) 
• R-Value Work: 
  0.192 (Depositor) 

Literature

Crystal structure of the conserved core of the herpes simplex virus transcriptional regulatory protein VP16.

Liu, Y., Gong, W., Huang, C.C., Herr, W., Cheng, X.

(1999) Genes Dev 13: 1692-1703

• PubMed: 10398682 
• DOI: https://doi.org/10.1101/gad.13.13.1692
• Primary Citation Related Structures: 
  16VP


• PubMed Abstract: 
  

  On infection, the herpes simplex virus (HSV) virion protein VP16 (Vmw65; alphaTIF) forms a transcriptional regulatory complex-the VP16-induced complex-with two cellular proteins, HCF and Oct-1, on VP16-responsive cis-regulatory elements in HSV immediate-early promoters called TAATGARAT. Comparison of different HSV VP16 sequences reveals a conserved core region that is sufficient for VP16-induced complex formation. The crystal structure of the VP16 core has been determined at 2.1 A resolution. The results reveal a novel, seat-like protein structure. Together with the activity of mutant VP16 proteins, the structure of free VP16 suggests that it contains (1) a disordered carboxy-terminal region that associates with HCF, Oct-1, and DNA in the VP16-induced complex, and (2) a structured region involved in virion assembly and possessing a novel DNA-binding surface that differentiates among TAATGARAT VP16-response elements.

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Organizational Affiliation: 
• Cold Spring Harbor Laboratory, Cold Spring Harbor, New York 11724, USA.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 41.67 kDa 
• Atom Count: 2,637 
• Modeled Residue Count: 311 
• Deposited Residue Count: 366 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
PROTEIN (VP16, VMW65, ATIF)	A	366	Human alphaherpesvirus 1	Mutation(s): 0
UniProt
Find proteins for P06492 (Human herpesvirus 1 (strain 17)) Explore P06492  Go to UniProtKB:  P06492

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
SO4	B [auth A], C [auth A]	SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.10 Å
• R-Value Free:  0.260 (Depositor) 
• R-Value Work:  0.192 (Depositor) 

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 59.5	α = 90
b = 77.1	β = 90
c = 84	γ = 90

Software Package:

Software Name	Purpose
PHASES	phasing
X-PLOR	refinement
DENZO	data reduction
SCALEPACK	data scaling

Structure Validation

Entry History 

Deposition Data

• Released Date: 1999-07-28 
Deposition Author(s): Liu, Y., Gong, W., Huang, C.C., Herr, W., Cheng, X.

Revision History  

• Version 1.0: 1999-07-28
  Type: Initial release
  
• Version 1.1: 2008-04-26
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2023-12-27
  Changes: Data collection, Database references, Derived calculations