135D

SOLUTION STRUCTURE OF A PURINE(DOT)PURINE(DOT)PYRIMIDINE DNA TRIPLEX CONTAINING G(DOT)GC AND T(DOT)AT TRIPLES

• PDB DOI:  https://doi.org/10.2210/pdb135D/pdb
• NAKB: 135D

• Classification: DNA
• Mutation(s): No 


• Deposited: 1993-08-30 Released: 1994-04-30 
• Deposition Author(s): Radhakrishnan, I., Patel, D.J.

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Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Submitted: 1 

Literature

Solution structure of a purine.purine.pyrimidine DNA triplex containing G.GC and T.AT triples.

Radhakrishnan, I., Patel, D.J.

(1993) Structure 1: 135-152

• PubMed: 8069626 
• DOI: https://doi.org/10.1016/0969-2126(93)90028-f
• Primary Citation of Related Structures:  
  134D, 135D, 136D


• PubMed Abstract: 
  

Oligonucleotide-directed triple helix formation allows sequence specific recognition of double helical DNA. This powerful approach has been used to inhibit gene transcription in vitro and to mediate single site specific cleavage of a human chromosome.

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Related Citations: 

• Solution Structure of an Intramolecular Purine(Dot)Purine(Dot)Pyrimidine DNA Triplex
  Radhakrishnan, I., Patel, D.J.
  (1993) J Am Chem Soc 115: 1615

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Organizational Affiliation: 

Department of Biochemistry and Molecular Biophysics, College of Physicians and Surgeons, Columbia University, New York NY 10032.

Biological Assembly 1  

Biological assembly 1 assigned by authors.

Macromolecule Content

• Total Structure Weight: 9.55 kDa 
• Atom Count: 506 
• Modelled Residue Count: 25 
• Deposited Residue Count: 31 
• Unique nucleic acid chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Length	Organism	Image
DNA TRIPLEX	A	31	N/A

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Submitted: 1 

Structure Validation

Currently 135D does not have a validation slider image.

Entry History 

Deposition Data

• Released Date: 1994-04-30 
Deposition Author(s): Radhakrishnan, I., Patel, D.J.

Revision History  

• Version 1.0: 1994-04-30
  Type: Initial release
  
• Version 1.1: 2008-03-24
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2022-02-16
  Changes: Database references, Derived calculations, Other