Macromolecule Content

Total Structure Weight: 18112.80
Atom Count: 1275
Residue Count: 154
Unique protein chains: 1

101M

SPERM WHALE MYOGLOBIN F46V N-BUTYL ISOCYANIDE AT PH 9.0

DOI: 10.2210/pdb101M/pdb

Classification: OXYGEN TRANSPORT
Organism(s): Physeter catodon
Expression System: Escherichia coli
Mutation(s): 2

Deposited: 1997-12-13 Released: 1998-04-08
Deposition Author(s): Smith, R.D., Olson, J.S., Phillips Jr., G.N.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.07 Å
R-Value Free: 0.202
R-Value Work: 0.157

wwPDB Validation3D Report Full Report

This is version 1.3 of the entry. See complete history.

Literature

Correlations between Bound N-Alkyl Isocyanide Orientations and Pathways for Ligand Binding in Recombinant Myoglobins

(1999) Thesis, Rice --: --

Macromolecules

Find similar proteins by: Sequence | Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details
MYOGLOBIN	A	154	Physeter catodon	Mutation(s): 2 Gene Names: MB
Find proteins for P02185 (Physeter catodon) Go to Gene View: MB Go to UniProtKB: P02185
Protein Feature View Full Protein Feature View for P02185

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram & Interactions	3D Interactions
SO4 Query on SO4 Download SDF File Download CCD File	A	SULFATE ION O₄ S QAOWNCQODCNURD-UHFFFAOYSA-L		Ligand Interaction
NBN Query on NBN Download SDF File Download CCD File	A	N-BUTYL ISOCYANIDE C₅ H₉ N FSBLVBBRXSCOKU-UHFFFAOYSA-N		Ligand Interaction
HEM Query on HEM Download SDF File Download CCD File	A	PROTOPORPHYRIN IX CONTAINING FE HEME C₃₄ H₃₂ Fe N₄ O₄ KABFMIBPWCXCRK-RGGAHWMASA-L		Ligand Interaction

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.07 Å
R-Value Free: 0.202
R-Value Work: 0.157
Space Group: P 6

Unit Cell:

Length (Å)	Angle (°)
a = 91.670	α = 90.00
b = 91.670	β = 90.00
c = 45.970	γ = 120.00

Software Package:

Software Name	Purpose
XDS	data reduction
X-PLOR	phasing
XSCALE	data scaling
X-PLOR	model building
X-PLOR	refinement

Structure Validation

View Full Validation Report or Ramachandran Plots

Entry History

Deposition Data

Deposited Date: 1997-12-13
Released Date: 1998-04-08
Deposition Author(s): Smith, R.D., Olson, J.S., Phillips Jr., G.N.

Revision History

Version 1.0: 1998-04-08
Type: Initial release
Version 1.1: 2008-03-24
Type: Version format compliance
Version 1.2: 2011-07-13
Type: Version format compliance
Version 1.3: 2018-03-07
Type: Data collection, Other

The RCSB PDB is funded by a grant (DBI-1338415) from the National Science Foundation, the National Institutes of Health, and the US Department of Energy.