8K1I | pdb_00008k1i

Crystal structure of arabinose dehydrogenase from Candida auris

PDB DOI: https://doi.org/10.2210/pdb8K1I/pdb

Classification: OXIDOREDUCTASE
Organism(s): Candidozyma auris
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2023-07-11 Released: 2023-08-30
Deposition Author(s): Zhang, J., Bai, X., He, S.R., Zhao, Z.D.
Funding Organization(s): National Research Foundation (NRF, Korea)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.95 Å
R-Value Free:
0.314 (Depositor), 0.310 (DCC)
R-Value Work:
0.255 (Depositor), 0.250 (DCC)
R-Value Observed:
0.258 (Depositor)

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Crystal structure of arabinose dehydrogenase from Candida auris

Zhang, J., Bai, X., He, S.R., Zhao, Z.D.

To be published.

Macromolecule Content

Total Structure Weight: 159.35 kDa
Atom Count: 11,511
Modeled Residue Count: 1,384
Deposited Residue Count: 1,404
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
NADP-dependent oxidoreductase domain-containing protein	A, B, C, D	351	Candidozyma auris	Mutation(s): 0 Gene Names: QG37_02322
UniProt
Find proteins for A0A0L0P3H9 (Candidozyma auris) Explore A0A0L0P3H9 Go to UniProtKB: A0A0L0P3H9
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0A0L0P3H9
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.95 Å
R-Value Free: 0.314 (Depositor), 0.310 (DCC)
R-Value Work: 0.255 (Depositor), 0.250 (DCC)
R-Value Observed: 0.258 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 71.634	α = 90
b = 91.119	β = 90
c = 227.712	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-2000	data reduction
HKL-2000	data scaling
PHENIX	phasing

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2023-08-30

Deposition Author(s):

Funding Organization	Location	Grant Number
National Research Foundation (NRF, Korea)	Korea, Republic Of	--

Revision History (Full details and data files)

Version 1.0: 2023-08-30
Type: Initial release

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.