7XYC | pdb_00007xyc

CryoEM structure of Klebsiella phage Kp7 type II tail fiber gp52 in vitro

PDB DOI: https://doi.org/10.2210/pdb7XYC/pdb
EM Map EMD-33519: EMDB EMDataResource

Classification: VIRAL PROTEIN
Organism(s): Klebsiella phage Kp7
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2022-06-01 Released: 2023-06-07
Deposition Author(s): Huang, L., Xiang, Y.
Funding Organization(s): National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.80 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Structure and assembly of the Klebsiella pneumoniae phage tail fibers

Huang, L., Xiang, Y.

To be published.

Macromolecule Content

Total Structure Weight: 183.63 kDa
Atom Count: 12,621
Modeled Residue Count: 1,686
Deposited Residue Count: 1,725
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
phage tail fiber	A, B, C	575	Klebsiella phage Kp7	Mutation(s): 0
UniProt
Find proteins for A0AA82WNZ2 (Klebsiella phage Kp7) Explore A0AA82WNZ2 Go to UniProtKB: A0AA82WNZ2
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0AA82WNZ2
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 3.80 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

EM Software:

Task	Software Package	Version
RECONSTRUCTION	RELION	3.0.8

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2023-06-07

Deposition Author(s):

Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)	China	--

Revision History (Full details and data files)

Version 1.0: 2023-06-07
Type: Initial release
Version 1.1: 2024-07-03
Changes: Data collection

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.