7LVN

Solution structure of tarantula toxin omega-Avsp1a


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 30 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy and best stereochemical properties as accord to MolProbity 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

The Tarantula Toxin omega-Avsp1a Specifically Inhibits Human Ca V 3.1 and Ca V 3.3 via the Extracellular S3-S4 Loop of the Domain 1 Voltage-Sensor.

Herzig, V.Chen, Y.C.Chin, Y.K.Dekan, Z.Chang, Y.W.Yu, H.M.Alewood, P.F.Chen, C.C.King, G.F.

(2022) Biomedicines 10

  • DOI: https://doi.org/10.3390/biomedicines10051066
  • Primary Citation of Related Structures:  
    7LVN

  • PubMed Abstract: 

    Inhibition of T-type calcium channels (Ca V 3) prevents development of diseases related to cardiovascular and nerve systems. Further, knockout animal studies have revealed that some diseases are mediated by specific subtypes of Ca V 3. However, subtype-specific Ca V 3 inhibitors for therapeutic purposes or for studying the physiological roles of Ca V 3 subtypes are missing. To bridge this gap, we employed our spider venom library and uncovered that Avicularia spec. ("Amazonas Purple", Peru) tarantula venom inhibited specific T-type Ca V channel subtypes. By using chromatographic and mass-spectrometric techniques, we isolated and sequenced the active toxin ω-Avsp1a, a C-terminally amidated 36 residue peptide with a molecular weight of 4224.91 Da, which comprised the major peak in the venom. Both native (4.1 μM) and synthetic ω-Avsp1a (10 μM) inhibited 90% of Ca V 3.1 and Ca V 3.3, but only 25% of Ca V 3.2 currents. In order to investigate the toxin binding site, we generated a range of chimeric channels from the less sensitive Ca V 3.2 and more sensitive Ca V 3.3. Our results suggest that domain-1 of Ca V 3.3 is important for the inhibitory effect of ω-Avsp1a on T-type calcium channels. Further studies revealed that a leucine of T-type calcium channels is crucial for the inhibitory effect of ω-Avsp1a.


  • Organizational Affiliation

    Institute for Molecular Bioscience, The University of Queensland, Brisbane, QLD 4072, Australia.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Omega-Avsp1a37Avicularia sp. AVIC29FPMMutation(s): 0 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 30 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy and best stereochemical properties as accord to MolProbity 

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2022-03-02
    Type: Initial release
  • Version 1.1: 2023-06-14
    Changes: Other
  • Version 1.2: 2023-10-11
    Changes: Data collection, Database references