6XUO

mature recombinant horse NGF

PDB DOI: https://doi.org/10.2210/pdb6XUO/pdb

Classification: CYTOKINE
Organism(s): Equus caballus
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2020-01-20 Released: 2020-01-29
Deposition Author(s): Kalnins, G.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.80 Å
R-Value Free: 0.266
R-Value Work: 0.219
R-Value Observed: 0.224

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Mature horse nerve growth factor at 2.8 angstrom resolution

Kalnins, G., Tars, K.

To be published.

Macromolecule Content

Total Structure Weight: 25.11 kDa
Atom Count: 840
Modelled Residue Count: 107
Deposited Residue Count: 224
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Nerve growth factor	A	224	Equus caballus	Mutation(s): 0 Gene Names: NGF
UniProt
Find proteins for F6SVV7 (Equus caballus) Explore F6SVV7 Go to UniProtKB: F6SVV7
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	F6SVV7
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
ZN Query on ZN Download Ideal Coordinates CCD File SDF format, chain B [auth A] SDF format, chain C [auth A] MOL2 format, chain B [auth A] MOL2 format, chain C [auth A]	B [auth A], C [auth A]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N		Interactions Focus chain B [auth A] Focus chain C [auth A] Interactions & Density Focus chain B [auth A] Focus chain C [auth A]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.80 Å
R-Value Free: 0.266
R-Value Work: 0.219
R-Value Observed: 0.224
Space Group: I 2₁ 3

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 108.49	α = 90
b = 108.49	β = 90
c = 108.49	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
PDB_EXTRACT	data extraction
MOSFLM	data reduction
SCALA	data scaling
MOLREP	phasing

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2020-01-29

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2020-01-29
Type: Initial release
Version 1.1: 2024-01-24
Changes: Data collection, Database references, Refinement description

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.