6F3T

Crystal structure of the human TAF5-TAF6-TAF9 complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.50 Å
  • R-Value Free: 0.220 
  • R-Value Work: 0.197 
  • R-Value Observed: 0.198 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Chaperonin CCT checkpoint function in basal transcription factor TFIID assembly.

Antonova, S.V.Haffke, M.Corradini, E.Mikuciunas, M.Low, T.Y.Signor, L.van Es, R.M.Gupta, K.Scheer, E.Vos, H.R.Tora, L.Heck, A.J.R.Timmers, H.T.M.Berger, I.

(2018) Nat Struct Mol Biol 25: 1119-1127

  • DOI: https://doi.org/10.1038/s41594-018-0156-z
  • Primary Citation of Related Structures:  
    6F3T

  • PubMed Abstract: 

    TFIID is a cornerstone of eukaryotic gene regulation. Distinct TFIID complexes with unique subunit compositions exist and several TFIID subunits are shared with other complexes, thereby conveying precise cellular control of subunit allocation and functional assembly of this essential transcription factor. However, the molecular mechanisms that underlie the regulation of TFIID remain poorly understood. Here we use quantitative proteomics to examine TFIID submodules and assembly mechanisms in human cells. Structural and mutational analysis of the cytoplasmic TAF5-TAF6-TAF9 submodule identified novel interactions that are crucial for TFIID integrity and for allocation of TAF9 to TFIID or the Spt-Ada-Gcn5 acetyltransferase (SAGA) co-activator complex. We discover a key checkpoint function for the chaperonin CCT, which specifically associates with nascent TAF5 for subsequent handover to TAF6-TAF9 and ultimate holo-TFIID formation. Our findings illustrate at the molecular level how multisubunit complexes are generated within the cell via mechanisms that involve checkpoint decisions facilitated by a chaperone.


  • Organizational Affiliation

    Molecular Cancer Research and Regenerative Medicine, University Medical Centre Utrecht, Utrecht, The Netherlands.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Transcription initiation factor TFIID subunit 5
A, B, C, D
608Homo sapiensMutation(s): 0 
Gene Names: TAF5TAF2D
UniProt & NIH Common Fund Data Resources
Find proteins for Q15542 (Homo sapiens)
Explore Q15542 
Go to UniProtKB:  Q15542
PHAROS:  Q15542
GTEx:  ENSG00000148835 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ15542
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Transcription initiation factor TFIID subunit 6
E, G, I, K
94Homo sapiensMutation(s): 0 
Gene Names: TAF6TAF2ETAFII70
UniProt & NIH Common Fund Data Resources
Find proteins for P49848 (Homo sapiens)
Explore P49848 
Go to UniProtKB:  P49848
PHAROS:  P49848
GTEx:  ENSG00000106290 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP49848
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Transcription initiation factor TFIID subunit 9
F, H, J, L
116Homo sapiensMutation(s): 0 
Gene Names: TAF9TAF2GTAFII31
UniProt & NIH Common Fund Data Resources
Find proteins for Q16594 (Homo sapiens)
Explore Q16594 
Go to UniProtKB:  Q16594
PHAROS:  Q16594
GTEx:  ENSG00000273841 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ16594
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.50 Å
  • R-Value Free: 0.220 
  • R-Value Work: 0.197 
  • R-Value Observed: 0.198 
  • Space Group: I 2 3
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 339.05α = 90
b = 339.05β = 90
c = 339.05γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
XSCALEdata scaling
PDB_EXTRACTdata extraction
XDSdata reduction
MOLREPphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Wellcome TrustUnited Kingdom106115/Z/14/Z

Revision History  (Full details and data files)

  • Version 1.0: 2018-12-05
    Type: Initial release
  • Version 1.1: 2018-12-12
    Changes: Data collection, Database references
  • Version 1.2: 2018-12-19
    Changes: Data collection, Database references