4ZV8

Structure of CYP2B6 (Y226H/K262R) with additional mutation Y244W in complex with alpha-Pinene


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.24 Å
  • R-Value Free: 0.232
  • R-Value Work: 0.169

Literature

Macromolecules
Sequence Display for 4ZV8

Classification: OXIDOREDUCTASE

Total Structure Weight: 56410.91

Macromolecule Entities
Molecule Chains Length Organism Details
Cytochrome P450 2B6 A 476 Homo sapiens EC#: 1.14.13 IUBMB
Fragment: UNP residues 30-491
Mutation: Y226H, Y244W, K262R
Gene Name(s): CYP2B6 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
HEM
Query on HEM

A PROTOPORPHYRIN IX CONTAINING FE
HEME (Synonym)
C34 H32 Fe N4 O4
KABFMIBPWCXCRK-RGGAHWMASA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CM5
Query on CM5

A 5-CYCLOHEXYL-1-PENTYL-BETA-D-MALTOSIDE
5-CYCLOHEXYLPENTYL 4-O-ALPHA-D-GLUCOPYRANOSYL- BETA-D-GLUCOPYRANOSIDE; CYMAL-5 (Synonym)
C23 H42 O11
RVTGFZGNOSKUDA-ZNGNCRBCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
TMH
Query on TMH

A (+)-alpha-Pinene
6, (Synonym)
C10 H16
GRWFGVWFFZKLTI-RKDXNWHRSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.24 Å
  • R-Value Free: 0.232
  • R-Value Work: 0.169
  • Space Group: P 32 2 1

Unit Cell:

Length (Å) Angle (°)
a = 77.24 α = 90.00
b = 77.24 β = 90.00
c = 204.25 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2015-05-18
  • Released Date: 2016-03-30
  • Deposition author(s): Liu, J., Shah, M.B., Stout, C.D., Halpert, J.R.

Revision History

  • 2016-07-13
    Type: Database references