Download MendeleyRCK domain with CDA
Chin, K.H., Chou, S.H.To be published.
4YS2
RCK domain with CDA
- PDB DOI: https://doi.org/10.2210/pdb4YS2/pdb
- Classification: IMMUNE SYSTEM
- Organism(s): Staphylococcus aureus
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2015-03-16 Released: 2016-04-27
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.97 Å
- R-Value Free: 0.250
- R-Value Work: 0.229
- R-Value Observed: 0.236
This is version 1.1 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Na+/H+ antiporter-like protein | 84 | Staphylococcus aureus | Mutation(s): 0 |  | |
UniProt | |||||
Find proteins for Q2FZQ4 (Staphylococcus aureus (strain NCTC 8325 / PS 47)) Explore Q2FZQ4 Go to UniProtKB: Q2FZQ4 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q2FZQ4 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| 2BA Query on 2BA | C [auth A] | (2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-2,9-bis(6-amino-9H-purin-9-yl)octahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8
]tetraoxadiphosphacyclododecine-3,5,10,12-tetrol 5,12-dioxide C20 H24 N10 O12 P2 PDXMFTWFFKBFIN-XPWFQUROSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.97 Å
- R-Value Free: 0.250
- R-Value Work: 0.229
- R-Value Observed: 0.236
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 41.195 | α = 90 |
| b = 45.843 | β = 90 |
| c = 69.79 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| HKL-2000 | data processing |
| HKL-2000 | data scaling |
| PHENIX | phasing |
Entry History
Deposition Data
- Released Date: 2016-04-27 Deposition Author(s): Chin, K.H., Chou, S.H.
Revision History (Full details and data files)
- Version 1.0: 2016-04-27
Type: Initial release - Version 1.1: 2020-02-05
Changes: Data collection, Derived calculations
