1BCP

BINARY COMPLEX OF PERTUSSIS TOXIN AND ATP


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.70 Å
  • R-Value Work: 0.232 
  • R-Value Observed: 0.232 

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This is version 1.2 of the entry. See complete history


Literature

Crystal structure of the pertussis toxin-ATP complex: a molecular sensor.

Hazes, B.Boodhoo, A.Cockle, S.A.Read, R.J.

(1996) J Mol Biol 258: 661-671

  • DOI: https://doi.org/10.1006/jmbi.1996.0277
  • Primary Citation of Related Structures:  
    1BCP

  • PubMed Abstract: 

    Pertussis toxin is a major virulence factor of Bordetella pertussis, the causative agent of whooping cough. The protein is a hexamer containing a catalytic subunit (S1) that is tightly associated with a pentameric cell-binding component (B-oligomer). In vitro experiments have shown that ATP and a number of detergents and phospholipids assist in activating the holotoxin by destabilizing the interaction between S1 and the B-oligomer. Similar processes may play a role in the activation of pertussis toxin in vivo. In this paper we present the crystal structure of the pertussis toxin-ATP complex and discuss the structural basis for the ATP-induced activation. In addition, we propose a physiological role for the ATP effect in the process by which the toxin enters the cytoplasm of eukaryotic cells. The key features of this proposal are that ATP binding signals the arrival of the toxin in the endoplasmic reticulum and, at the same time, triggers dissociation of the holotoxin prior to membrane translocation.


  • Organizational Affiliation

    Department of Medical Microbiology and Immunology, University of Alberta, Edmonton, Canada.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
PERTUSSIS TOXIN
A, G
235Bordetella pertussisMutation(s): 0 
EC: 2.4.2
UniProt
Find proteins for P04977 (Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251))
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Go to UniProtKB:  P04977
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UniProt GroupP04977
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
PERTUSSIS TOXIN
B, H
199Bordetella pertussisMutation(s): 0 
EC: 2.4.2
UniProt
Find proteins for P04978 (Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251))
Explore P04978 
Go to UniProtKB:  P04978
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UniProt GroupP04978
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
PERTUSSIS TOXIN
C, I
199Bordetella pertussisMutation(s): 0 
EC: 2.4.2
UniProt
Find proteins for P04979 (Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251))
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Go to UniProtKB:  P04979
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UniProt GroupP04979
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  • Reference Sequence
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
PERTUSSIS TOXIN
D, E, J, K
110Bordetella pertussisMutation(s): 0 
EC: 2.4.2
UniProt
Find proteins for P0A3R5 (Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251))
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
PERTUSSIS TOXIN
F, L
99Bordetella pertussisMutation(s): 0 
EC: 2.4.2
UniProt
Find proteins for P04981 (Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251))
Explore P04981 
Go to UniProtKB:  P04981
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UniProt GroupP04981
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  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
ATP
Query on ATP

Download Ideal Coordinates CCD File 
M [auth E],
N [auth K]
ADENOSINE-5'-TRIPHOSPHATE
C10 H16 N5 O13 P3
ZKHQWZAMYRWXGA-KQYNXXCUSA-N
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.70 Å
  • R-Value Work: 0.232 
  • R-Value Observed: 0.232 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 163.8α = 90
b = 98.2β = 90
c = 194.5γ = 90
Software Package:
Software NamePurpose
WEISdata collection
X-PLORrefinement
WEISdata reduction

Structure Validation

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Ligand Structure Quality Assessment 


Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 1997-06-05
    Type: Initial release
  • Version 1.1: 2008-03-21
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance