9OEA | pdb_00009oea

SIPV1-5E12 Complex


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.84 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Neutralizing human monoclonal antibodies to poliovirus map to the receptor binding site.

Waddey, B.T.Charnesky, A.J.Faust, J.E.DiNunno, N.M.Puligedda, R.D.Cho, S.H.Bator, C.M.Dong, S.D.Mahmood, K.Chumakov, K.M.Dessain, S.K.Hafenstein, S.L.

(2026) Nat Commun 

  • DOI: https://doi.org/10.1038/s41467-025-68226-x
  • Primary Citation of Related Structures:  
    9OCL, 9OCO, 9OD3, 9OEA

  • PubMed Abstract: 

    Poliovirus remains a serious threat to human health. Complete eradication of wild-type poliovirus has not yet succeeded, making the development of successful antivirals critical. Microneutralization assays against all three poliovirus serotypes identified a panel of human monoclonal IgGs, which are either serotype-specific or cross-neutralizing. Here, through cryoEM single particle analysis, we solved high resolution structures of four distinct poliovirus-FAb complexes. These antibodies bind to capsids at the circular depression (canyon) surrounding the icosahedral five-fold symmetry axis, which is also the binding site of the poliovirus receptor (PVR). Analysis of these structures confirms overlap of FAb contacts on the viral capsid with those of PVR. For three of the FAbs, the capsid residues are identified that dictate serotype-specific recognition. Contacts for the cross-neutralizing mAb 10D2 are located deep in the capsid canyon. These structural analyses indicate that antibody competition with the receptor likely leads to neutralization of virus particles and inhibition of poliovirus entry into host cells. Thus, the human IgGs studied here may facilitate development of therapeutics for the ongoing efforts in global eradication of poliovirus.


  • Organizational Affiliation
    • College of Biological Sciences, University of Minnesota, Twin Cities, St. Paul, MN, USA.

Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Capsid protein VP1A [auth 1]302Human poliovirus 1 strain SabinMutation(s): 0 
UniProt
Find proteins for P03301 (Poliovirus type 1 (strain Sabin))
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Go to UniProtKB:  P03301
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Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP03301
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Capsid protein VP2B [auth 2]272Human poliovirus 1 strain SabinMutation(s): 0 
UniProt
Find proteins for P03301 (Poliovirus type 1 (strain Sabin))
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Go to UniProtKB:  P03301
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UniProt GroupP03301
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Capsid protein VP3C [auth 3]238Human poliovirus 1 strain SabinMutation(s): 0 
UniProt
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Go to UniProtKB:  P03301
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UniProt GroupP03301
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Capsid protein VP4D [auth 4]68Human poliovirus 1 strain SabinMutation(s): 0 
UniProt
Find proteins for P03301 (Poliovirus type 1 (strain Sabin))
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Go to UniProtKB:  P03301
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UniProt GroupP03301
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
5E12 Heavy ChainE [auth H]127Homo sapiensMutation(s): 0 
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
5E12 Light ChainF [auth L]107Homo sapiensMutation(s): 0 
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Small Molecules
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.84 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX1.21_5207
RECONSTRUCTIONcryoSPARC4.6.2

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)United StatesAI10721-01

Revision History  (Full details and data files)

  • Version 1.0: 2025-12-17
    Type: Initial release
  • Version 1.1: 2026-01-14
    Changes: Data collection, Database references