9NCO | pdb_00009nco

IN-ML-15 bound to IGF1Rzip


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.40 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report

Validation slider image for 9NCO

This is version 1.1 of the entry. See complete history

Literature

An engineered insulin analog with dual insulin and IGF-1 receptor agonism and distinct signaling.

Selicharova, I.Kirk, N.S.Kertisova, A.Lubos, M.Mitrova, K.Tichackova, T.Zakova, L.Chrudinova, M.Brezinova, J.Harant, K.Voldrich, J.Hajek, M.Huffman, D.M.Jiracek, J.

(2026) Sci Adv 12: eaeb7558-eaeb7558

  • DOI: https://doi.org/10.1126/sciadv.aeb7558
  • Primary Citation Related Structures: 
    9NCO

  • PubMed Abstract: 

    Insulin and insulin-like growth factors (IGF-1 and IGF-2) regulate metabolism, growth, and development via related receptors. In contexts such as brain function or fetal development, coordinated signaling by all three hormones is essential. We report the engineering of [GluB10, D-HisB24, GlyB31, TyrB32]-insulin ( 1 Ins ), an analog with high affinity for IR-A, IR-B, and especially IGF-1R. 1 Ins binds IGF-1R ~1000-fold more strongly than native insulin, approaching IGF-1 levels. Cryo-electron microscopy structures reveal how minimal substitutions in 1 Ins enable effective binding to both IR-A and IGF-1R. In neuronal cells, 1 Ins robustly activates both IR and IGF-1R pathways, promotes survival, and exceeds native ligands in neuroprotective assays. In vivo, 1 Ins regulates glucose effectively in mice and rats. Phosphoproteomic profiling confirms dual pathway activation and identifies targets specific to 1 Ins . These findings demonstrate that rational design of dual-receptor agonists can yield potent, versatile ligands with therapeutic promise in metabolic control, neuroprotection, and regeneration.


  • Organizational Affiliation
    • Institute of Organic Chemistry and Biochemistry, Czech Academy of Sciences, Flemingovo n. 2, 16000 Praha 6, Czech Republic.

Macromolecule Content 

  • Total Structure Weight: 210.36 kDa 
  • Atom Count: 13,604 
  • Modeled Residue Count: 1,694 
  • Deposited Residue Count: 1,843 
  • Unique protein chains: 3

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Insulin-like growth factor 1 receptor
A, B
896Homo sapiensMutation(s): 0 
Gene Names: IGF1R
EC: 2.7.10.1
UniProt & NIH Common Fund Data Resources
Find proteins for P08069 (Homo sapiens)
Explore P08069 
Go to UniProtKB:  P08069
PHAROS:  P08069
GTEx:  ENSG00000140443 
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP08069
Sequence Annotations
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Reference Sequence
Find similar proteins by:|  3D Structure
Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
IN-ML-15 beta30synthetic constructMutation(s): 0 
Entity Groups
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Sequence Annotations
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Reference Sequence
Find similar proteins by:  Sequence   |   3D Structure  
Entity ID: 3
MoleculeChains  Sequence LengthOrganismDetailsImage
IN-ML-15 alpha21synthetic constructMutation(s): 0 
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations
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Reference Sequence

Small Molecules

Modified Residues  1 Unique
IDChains TypeFormula2D DiagramParent
DHI
Query on DHI
C
D-PEPTIDE LINKINGC6 H10 N3 O2

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Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.40 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX1.21.1_5286

Structure Validation

View Full Validation Report



Entry History 

& Funding Information

Deposition Data

  • Released Date: 2026-02-18 
  • Deposition Author(s): Kirk, N.S.

Funding OrganizationLocationGrant Number
Czech Academy of SciencesCzech RepublicRVO 61388963
Czech Science FoundationCzech Republic22-17978S

Revision History  (Full details and data files)

  • Version 1.0: 2026-02-18
    Type: Initial release
  • Version 1.1: 2026-09-02
    Changes: Data collection, Database references