8VSX

NMR Structure of GCAP5 R22A


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 500 
  • Conformers Submitted: 10 
  • Selection Criteria: structures with the least restraint violations 

wwPDB Validation   3D Report Full Report


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Literature

NMR Structure of Retinal Guanylate Cyclase Activating Protein 5 (GCAP5) with R22A Mutation That Abolishes Dimerization and Enhances Cyclase Activation.

Cudia, D.L.Ahoulou, E.O.Bej, A.Janssen, A.N.Scholten, A.Koch, K.W.Ames, J.B.

(2024) Biochemistry 

  • DOI: https://doi.org/10.1021/acs.biochem.4c00046
  • Primary Citation of Related Structures:  
    8VSX

  • PubMed Abstract: 

    Guanylate cyclase activating protein-5 (GCAP5) in zebrafish photoreceptors promotes the activation of membrane receptor retinal guanylate cyclase (GC-E). Previously, we showed the R22A mutation in GCAP5 (GCAP5 R22A ) abolishes dimerization of GCAP5 and activates GC-E by more than 3-fold compared to that of wild-type GCAP5 (GCAP5 WT ). Here, we present ITC, NMR, and functional analysis of GCAP5 R22A to understand how R22A causes a decreased dimerization affinity and increased cyclase activation. ITC experiments reveal GCAP5 R22A binds a total of 3 Ca 2+ , including two sites in the nanomolar range followed by a single micromolar site. The two nanomolar sites in GCAP5 WT were not detected by ITC, suggesting that R22A may affect the binding of Ca 2+ to these sites. The NMR-derived structure of GCAP5 R22A is overall similar to that of GCAP5 WT (RMSD = 2.3 Å), except for local differences near R22A (Q19, W20, Y21, and K23) and an altered orientation of the C-terminal helix near the N-terminal myristate. GCAP5 R22A lacks an intermolecular salt bridge between R22 and D71 that may explain the weakened dimerization. We present a structural model of GCAP5 bound to GC-E in which the R22 side-chain contacts exposed hydrophobic residues in GC-E. Cyclase assays suggest that GC-E binds to GCAP5 R22A with ∼25% higher affinity compared to GCAP5 WT , consistent with more favorable hydrophobic contact by R22A that may help explain the increased cyclase activation.


  • Organizational Affiliation

    Department of Chemistry, University of California, Davis, Davis, California 95616, United States.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Guanylyl cyclase-activating protein 1198Danio rerioMutation(s): 1 
Gene Names: GUCA1Eguca1e
UniProt
Find proteins for Q5MAC8 (Danio rerio)
Explore Q5MAC8 
Go to UniProtKB:  Q5MAC8
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ5MAC8
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 500 
  • Conformers Submitted: 10 
  • Selection Criteria: structures with the least restraint violations 

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Eye Institute (NIH/NEI)United StatesR01 EY012347

Revision History  (Full details and data files)

  • Version 1.0: 2024-05-08
    Type: Initial release