7XGB

Crystal structure of the ctcP from Streptomyces aureofaciens


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.70 Å
  • R-Value Free: 0.224 
  • R-Value Work: 0.176 
  • R-Value Observed: 0.178 

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Literature

Crystal structure determination of the halogenase CtcP from Streptomyces aureofaciens.

Yin, L.

(2022) Acta Crystallogr F Struct Biol Commun 78: 270-275

  • DOI: https://doi.org/10.1107/S2053230X22006586
  • Primary Citation of Related Structures:  
    7XGB

  • PubMed Abstract: 

    Chlortetracycline (CTC), a derivative of tetracycline (TC), is a broadly used antibiotic that inhibits the synthesis of bacterial proteins by competing with the A-site tRNA on ribosomes. A recent study showed that during the biosynthesis of CTC in Streptomyces aureofaciens, the halogenase CtcP catalyzes the final chlorination reaction and transforms TC into CTC. However, the structure of this fundamental enzyme is still lacking. Here, selenomethionine-derivatized CtcP from S. aureofaciens was overexpressed and purified and its structure was determined at 2.7 Å resolution. The structure of CtcP reveals the conserved monooxygenase domain shared by all flavin-dependent halogenases and a unique C-terminal domain. Although FAD was not observed in the structure, the monooxygenase domain has a conserved FAD-binding pocket and active center. The C-terminal domain displays an α-helical bundle fold, which could contribute to substrate specificity. This work provides a molecular basis for enzyme engineering to improve the industrial production of CTC.


  • Organizational Affiliation

    Department of Pathology, Changhai Hospital, The Second Military Medical University, 168 Changhai Road, Shanghai 200433, People's Republic of China.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Tetracycline 7-halogenase
A, B, C, D
556Kitasatospora aureofaciensMutation(s): 0 
Gene Names: ctcPcts4B6264_18525HS99_0013305
EC: 1.14.19.49
UniProt
Find proteins for A0A1E7MYN1 (Kitasatospora aureofaciens)
Explore A0A1E7MYN1 
Go to UniProtKB:  A0A1E7MYN1
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A1E7MYN1
Sequence Annotations
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  • Reference Sequence
Small Molecules
Modified Residues  1 Unique
IDChains TypeFormula2D DiagramParent
MSE
Query on MSE
A, B, C, D
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.70 Å
  • R-Value Free: 0.224 
  • R-Value Work: 0.176 
  • R-Value Observed: 0.178 
  • Space Group: P 2 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 116.393α = 90
b = 121.281β = 90
c = 179.194γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
HKL-2000data scaling
PDB_EXTRACTdata extraction
PHENIXphasing
Cootmodel building

Structure Validation

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Entry History & Funding Information

Deposition Data

  • Released Date: 2022-07-20 
  • Deposition Author(s): Yin, L.

Funding OrganizationLocationGrant Number
Not funded--

Revision History  (Full details and data files)

  • Version 1.0: 2022-07-20
    Type: Initial release