7QZV

Hm-AMP2

• PDB DOI: https://doi.org/10.2210/pdb7QZV/pdb
• BMRB: 34705

• Classification: ANTIMICROBIAL PROTEIN
• Organism(s): Hirudo medicinalis
• Mutation(s): No 


• Deposited: 2022-02-01 Released: 2022-11-23 
• Deposition Author(s): Grafskaia, E.N., Pavlova, E.R., Latsis, I.A., Malakhova, M.V., Lavrenova, V.N., Ivchenkov, D.V., Bashkirov, P.V., Kot, E.F., Mineev, K.S., Arseniev, A.S., Klinov, D.V., Lazarev, V.N.
• Funding Organization(s): Russian Science Foundation

---

Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Calculated: 100 
• Conformers Submitted: 20 
• Selection Criteria: target function 

Literature

Non-toxic antimicrobial peptide Hm-AMP2 from leech metagenome proteins identified by the gradient-boosting approach

Grafskaia, E.N., Pavlova, E.R., Latsis, I.A., Malakhova, M.V., Ivchenkov, D.V., Bashkirov, P.V., Kot, E.F., Mineev, K.S., Arseniev, A.S., Klinov, D.V., Lazarev, V.N.

(2022) Materials (Basel) 224: 111364

• DOI: https://doi.org/10.1016/j.matdes.2022.111364

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content

• Total Structure Weight: 1.73 kDa 
• Atom Count: 124 
• Modelled Residue Count: 13 
• Deposited Residue Count: 13 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Hm-AMP2	A	13	Hirudo medicinalis	Mutation(s): 0

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Calculated: 100 
• Conformers Submitted: 20 
• Selection Criteria: target function 

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2022-11-23 
Deposition Author(s): Grafskaia, E.N., Pavlova, E.R., Latsis, I.A., Malakhova, M.V., Lavrenova, V.N., Ivchenkov, D.V., Bashkirov, P.V., Kot, E.F., Mineev, K.S., Arseniev, A.S., Klinov, D.V., Lazarev, V.N.

---

Funding Organization	Location	Grant Number
Russian Science Foundation	Russian Federation	20-15-00270

Revision History  

• Version 1.0: 2022-11-23
  Type: Initial release