Download MendeleyCrystal structure of an octameric RuvA-Holliday junction complex
Roe, S.M., Pearl, L.H.(1998) Molecular Cell 2: 361-372
7OA5
RUVA COMPLEXED TO A HOLLIDAY JUNCTION.
- PDB DOI: https://doi.org/10.2210/pdb7OA5/pdb
- NAKB: 7OA5
- Classification: DNA BINDING PROTEIN
- Organism(s): Mycobacterium leprae TN, Mycobacterium leprae
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2021-04-19 Released: 2021-04-28
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.38 Å
- R-Value Free: 0.250
- R-Value Work: 0.227
- R-Value Observed: 0.228
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Re-refinement Note
This entry reflects an alternative modeling of the original data in: 1bvs
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Holliday junction ATP-dependent DNA helicase RuvA | 203 | Mycobacterium leprae TN | Mutation(s): 0 Gene Names: ruvA, ML0482, B1177_C2_188 EC: 3.6.4.12 |  | |
UniProt | |||||
Find proteins for P40832 (Mycobacterium leprae (strain TN)) Explore P40832 Go to UniProtKB: P40832 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P40832 | ||||
Sequence AnnotationsExpand | |||||
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Find similar nucleic acids by: Sequence | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Length | Organism | Image | |
| DNA (5'-D(*AP*GP*TP*TP*CP*GP*CP*GP*AP*GP*TP*TP*CP*GP*C)-3') | 15 | Mycobacterium leprae |  | ||
Sequence AnnotationsExpand | |||||
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Find similar nucleic acids by: Sequence | 3D Structure
Entity ID: 3 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Length | Organism | Image | |
| DNA (5'-D(*GP*CP*GP*AP*AP*CP*TP*CP*GP*CP*GP*AP*AP*C)-3') | 14 | Mycobacterium leprae |  | ||
Sequence AnnotationsExpand | |||||
| |||||
Find similar nucleic acids by: Sequence | 3D Structure
Entity ID: 4 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Length | Organism | Image | |
| DNA (5'-D(*AP*GP*TP*TP*CP*GP*CP*GP*CP*GP*CP*GP*AP*AP*CP*T)-3') | 16 | Mycobacterium leprae |  | ||
Sequence AnnotationsExpand | |||||
| |||||
Find similar nucleic acids by: Sequence | 3D Structure
Entity ID: 5 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Length | Organism | Image | |
| DNA (5'-D(P*GP*TP*TP*CP*GP*CP*GP*CP*GP*CP*GP*AP*AP*CP*T)-3') | 15 | Mycobacterium leprae |  | ||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| CA Query on CA | M [auth K], N [auth L] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.38 Å
- R-Value Free: 0.250
- R-Value Work: 0.227
- R-Value Observed: 0.228
- Space Group: P 31
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 141.35 | α = 90 |
| b = 141.35 | β = 90 |
| c = 106.47 | γ = 120 |
| Software Name | Purpose |
|---|---|
| BUSTER | refinement |
| MOSFLM | data reduction |
| Aimless | data scaling |
| PHENIX | phasing |
Entry History
Deposition Data
- Released Date: 2021-04-28 Deposition Author(s): Roe, S.M., Pearl, L.H.
Revision History (Full details and data files)
- Version 1.0: 2021-04-28
Type: Initial release - Version 1.1: 2024-01-31
Changes: Data collection, Database references, Refinement description
