6ZDB

NMR structural analysis of yeast Cox13 reveals its C-terminus in interaction with ATP

PDB DOI: https://doi.org/10.2210/pdb6ZDB/pdb
BMRB: 34522

Classification: STRUCTURAL PROTEIN
Organism(s): Saccharomyces cerevisiae S288C
Expression System: Escherichia coli K-12
Mutation(s): No
Membrane Protein: Yes OPMPDBTMMemProtMDmpstruc

Deposited: 2020-06-14 Released: 2021-05-19
Deposition Author(s): Shu, Z., Pontus, P., Peter, B., Lena, M., Pia, A.
Funding Organization(s): Knut and Alice Wallenberg Foundation

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 15
Selection Criteria: structures with the lowest energy

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

NMR structural analysis of the yeast cytochrome c oxidase subunit Cox13 and its interaction with ATP.

Zhou, S., Pettersson, P., Bjorck, M.L., Dawitz, H., Brzezinski, P., Maler, L., Adelroth, P.

(2021) BMC Biol 19: 98-98

PubMed: 33971868 Search on PubMedSearch on PubMed Central
DOI: https://doi.org/10.1186/s12915-021-01036-x
Primary Citation of Related Structures:
6ZDB

PubMed Abstract:
Mitochondrial respiration is organized in a series of enzyme complexes in turn forming dynamic supercomplexes. In Saccharomyces cerevisiae (baker's yeast), Cox13 (CoxVIa in mammals) is a conserved peripheral subunit of Complex IV (cytochrome c oxidase, CytcO), localized at the interface of dimeric bovine CytcO, which has been implicated in the regulation of the complex.

Organizational Affiliation

Department of Biochemistry and Biophysics, Stockholm University, Stockholm, Sweden.

Macromolecule Content

Total Structure Weight: 30.09 kDa
Atom Count: 2,124
Modelled Residue Count: 258
Deposited Residue Count: 258
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Cytochrome c oxidase subunit 13, mitochondrial	A, B	129	Saccharomyces cerevisiae S288C	Mutation(s): 0 Gene Names: COX13, YGL191W, G1341 Membrane Entity: Yes
UniProt
Find proteins for P32799 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P32799 Go to UniProtKB: P32799
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P32799
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 15
Selection Criteria: structures with the lowest energy

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2021-05-19

Deposition Author(s):

Funding Organization	Location	Grant Number
Knut and Alice Wallenberg Foundation	Sweden	--

Revision History (Full details and data files)

Version 1.0: 2021-05-19
Type: Initial release

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.