6QK5

Solution Structure of the Zn-loaded form of a Metallothionein from Helix Pomatia


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

The Solution Structure and Dynamics of Cd-Metallothionein fromHelix pomatiaReveal Optimization for Binding Cd over Zn.

Beil, A.Jurt, S.Walser, R.Schonhut, T.Guntert, P.Palacios, O.Atrian, S.Capdevila, M.Dallinger, R.Zerbe, O.

(2019) Biochemistry 58: 4570-4581

  • DOI: https://doi.org/10.1021/acs.biochem.9b00830
  • Primary Citation of Related Structures:  
    6QK5, 6QK6

  • PubMed Abstract: 

    Metallothioneins (MTs) are cysteine-rich polypeptides that are naturally found coordinated to monovalent and/or divalent transition metal ions. Three metallothionein isoforms from the Roman snail Helix pomatia are known. They differ in their physiological metal load and in their specificity for transition metal ions such as Cd 2+ (HpCdMT isoform) and Cu + (HpCuMT isoform) or in the absence of a defined metal specificity (HpCd/CuMT isoform). We have determined the solution structure of the Cd-specific isoform (HpCdMT) by nuclear magnetic resonance spectroscopy using recombinant isotopically labeled protein loaded with Zn 2+ or Cd 2+ . Both structures display two-domain architectures, where each domain comprises a characteristic three-metal cluster similar to that observed in the β-domains of vertebrate MTs. The polypeptide backbone is well-structured over the entire sequence, including the interdomain linker. Interestingly, the two domains display mutual contacts, as observed before for the metallothionein of the snail Littorina littorea , to which both N- and C-terminal domains are highly similar. Increasing the length of the linker motionally decouples both domains and removes mutual contacts between them without having a strong effect on the stability of the individual domains. The structures of Cd 6 - and Zn 6 -HpCdMT are nearly identical. However, 15 N relaxation, in particular 15 N R 2 rates, is accelerated for many residues of Zn 6 -HpCdMT but not for Cd 6 -HpCdMT, revealing the presence of conformational exchange effects. We suggest that this snail MT isoform is evolutionarily optimized for binding Cd rather than Zn.


  • Organizational Affiliation

    Department of Chemistry , University of Zurich , Winterthurerstrasse 190 , CH-8057 Zürich , Switzerland.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Cadmium-metallothionein67Helix pomatiaMutation(s): 0 
UniProt
Find proteins for P33187 (Helix pomatia)
Explore P33187 
Go to UniProtKB:  P33187
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP33187
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Swiss National Science FoundationSwitzerlandDach Project grant No I 1482-N28

Revision History  (Full details and data files)

  • Version 1.0: 2019-12-18
    Type: Initial release
  • Version 1.1: 2020-01-15
    Changes: Database references
  • Version 1.2: 2020-07-01
    Changes: Database references
  • Version 1.3: 2023-06-14
    Changes: Database references, Other