Crystal structure of Thermus thermophilus Argonaute in complex with g1C siDNA and DNA target
Zhao, H., Sheng, G., Wang, Y.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Thermus thermophilus Argonaute | A, D [auth B] | 685 | Thermus thermophilus HB27 | Mutation(s): 0  Gene Names: TT_P0026 | |
UniProt | |||||
Find proteins for Q746M7 (Thermus thermophilus (strain ATCC BAA-163 / DSM 7039 / HB27)) Explore Q746M7  Go to UniProtKB:  Q746M7 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q746M7 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Length | Organism | Image | |
DNA (5'-D(P*CP*GP*AP*GP*GP*TP*AP*GP*TP*AP*GP*GP*TP*TP*GP*T)-3') | B [auth C], E | 21 | Thermus thermophilus | ||
Sequence AnnotationsExpand | |||||
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Entity ID: 3 | |||||
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Molecule | Chains | Length | Organism | Image | |
DNA (5'-D(P*AP*CP*AP*AP*CP*CP*TP*AP*CP*TP*AP*CP*CP*TP*CP*G)-3') | C [auth D], F | 16 | Thermus thermophilus | ||
Sequence AnnotationsExpand | |||||
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Ligands 1 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
MG Query on MG | G [auth A] H [auth A] I [auth A] J [auth B] K [auth B] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
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a = 111.831 | α = 90 |
b = 116.503 | β = 90 |
c = 161.024 | γ = 90 |
Software Name | Purpose |
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PHENIX | refinement |
HKL-2000 | data reduction |
HKL-2000 | data scaling |
PHASER | phasing |
Funding Organization | Location | Grant Number |
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National Natural Science Foundation of China | China | 91440201 |
National Natural Science Foundation of China | China | 31571335 |
National Natural Science Foundation of China | China | 31400640 |
Ministry of Science and Technology (China) | China | 2014CB910102 |
Strategic Priority Research program of the Chinese Academy of Sciences | China | XDB08010203 |