New Delhi Metallo-beta-Lactamase-1 Complexed with Cd
Kim, Y., Tesar, C., Jedrzejczak, R., Babnigg, J., Binkowski, T.A., Mire, J., Sacchettini, J., Joachimiak, A.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Beta-lactamase NDM-1 | 237 | Klebsiella pneumoniae | Mutation(s): 2  Gene Names: blaNDM-1 EC: 3.5.2.6 | ||
UniProt | |||||
Find proteins for C7C422 (Klebsiella pneumoniae) Explore C7C422  Go to UniProtKB:  C7C422 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | C7C422 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 4 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
CD Query on CD | C [auth A] D [auth A] E [auth A] K [auth B] L [auth B] | CADMIUM ION Cd WLZRMCYVCSSEQC-UHFFFAOYSA-N | |||
GOL Query on GOL | F [auth A], I [auth A], N [auth B] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N | |||
SCN Query on SCN | J [auth B] | THIOCYANATE ION C N S ZMZDMBWJUHKJPS-UHFFFAOYSA-M | |||
CL Query on CL | G [auth A], H [auth A], O [auth B], P [auth B] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 108.945 | α = 90 |
b = 108.945 | β = 90 |
c = 237.883 | γ = 120 |
Software Name | Purpose |
---|---|
SBC-Collect | data collection |
HKL-3000 | data collection |
PHENIX | model building |
PHASER | phasing |
PHENIX | refinement |
HKL-3000 | data reduction |
HKL-3000 | data scaling |
PHENIX | phasing |