Download MendeleyCrystal structure of uncharacterized protein from Eubacterium ventriosum ATCC 27560.
Nocek, B., Keigher, L., Jedrzejczak, R., Joachimiak, A.To be published.
3FDI
Crystal structure of uncharacterized protein from Eubacterium ventriosum ATCC 27560.
- PDB DOI: https://doi.org/10.2210/pdb3FDI/pdb
- Classification: structural genomics, unknown function
- Organism(s): Eubacterium ventriosum ATCC 27560
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2008-11-25 Released: 2009-01-20
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.20 Å
- R-Value Free: 0.244
- R-Value Work: 0.198
- R-Value Observed: 0.200
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| uncharacterized protein | 201 | Eubacterium ventriosum ATCC 27560 | Mutation(s): 0 Gene Names: EUBVEN_02315 |  | |
UniProt | |||||
Find proteins for A5Z9C0 (Eubacterium ventriosum ATCC 27560) Explore A5Z9C0 Go to UniProtKB: A5Z9C0 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A5Z9C0 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SO4 Query on SO4 | C [auth A], D [auth A], F [auth B], G [auth B] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
| CL Query on CL | E [auth A], H [auth B] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.20 Å
- R-Value Free: 0.244
- R-Value Work: 0.198
- R-Value Observed: 0.200
- Space Group: C 1 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 84.613 | α = 90 |
| b = 114.932 | β = 128.06 |
| c = 59.53 | γ = 90 |
| Software Name | Purpose |
|---|---|
| SBC-Collect | data collection |
| HKL-3000 | phasing |
| SHELX | model building |
| Coot | model building |
| MLPHARE | phasing |
| CCP4 | model building |
| PHENIX | model building |
| REFMAC | refinement |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
| SHELX | phasing |
| CCP4 | phasing |
| PHENIX | phasing |
Entry History
Deposition Data
- Released Date: 2009-01-20 Deposition Author(s): Nocek, B., Keigher, L., Jedrzejczak, R., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
Revision History (Full details and data files)
- Version 1.0: 2009-01-20
Type: Initial release - Version 1.1: 2011-07-13
Changes: Advisory, Refinement description, Source and taxonomy, Version format compliance - Version 1.2: 2023-12-27
Changes: Data collection, Database references, Derived calculations
