3B4U

Crystal structure of dihydrodipicolinate synthase from Agrobacterium tumefaciens str. C58


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.20 Å
  • R-Value Free: 0.156 
  • R-Value Work: 0.127 
  • R-Value Observed: 0.128 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

The crystal structure of the dihydrodipicolinate synthase from Agrobacterium tumefaciens.

Zhang, R.Xu, L.Gu, J.Savchenko, A.Edwards, A.M.Joachimiak, A.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Dihydrodipicolinate synthase
A, B
294Agrobacterium fabrum str. C58Mutation(s): 0 
Gene Names: dapAAGR_C_4548Atu2503
UniProt
Find proteins for A9CHR2 (Agrobacterium fabrum (strain C58 / ATCC 33970))
Explore A9CHR2 
Go to UniProtKB:  A9CHR2
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA9CHR2
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
MG
Query on MG

Download Ideal Coordinates CCD File 
C [auth A]MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.20 Å
  • R-Value Free: 0.156 
  • R-Value Work: 0.127 
  • R-Value Observed: 0.128 
  • Space Group: P 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 44.116α = 79.35
b = 49.442β = 89.06
c = 69.084γ = 83.94
Software Package:
Software NamePurpose
REFMACrefinement
SBC-Collectdata collection
HKL-3000data reduction
HKL-3000data scaling
HKL-3000phasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2007-12-04
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Source and taxonomy, Version format compliance
  • Version 1.2: 2024-02-21
    Changes: Data collection, Database references, Derived calculations