3B6E

Crystal structure of human DECH-box RNA Helicase MDA5 (Melanoma differentiation-associated protein 5), DECH-domain


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.204
  • R-Value Work: 0.179

Literature

Macromolecules
Sequence Display for 3B6E

Classification: HYDROLASE

Total Structure Weight: 24127.85

Macromolecule Entities
Molecule Chains Length Organism Details
Interferon-induced helicase C domain-containing protein 1 A 216 Homo sapiens EC#: 3.6.4.13 IUBMB
Fragment: DECH domain: Residues 277-490
Gene Name(s): IFIH1 Gene View MDA5 RH116
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NA
Query on NA

A SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.204
  • R-Value Work: 0.179
  • Space Group: P 65 2 2

Unit Cell:

Length (Å) Angle (°)
a = 72.83 α = 90.00
b = 72.83 β = 90.00
c = 182.78 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-10-29
  • Released Date: 2007-11-13
  • Deposition author(s): Karlberg, T., Welin, M., Arrowsmith, C.H., Berglund, H., Busam, R.D., Collins, R., Dahlgren, L.G., Edwards, A.M., Flodin, S., Flores, A., Graslund, S., Hammarstrom, M., Johansson, I., Kallas, A., Kotenyova, T., Lehtio, L., Moche, M., Nilsson, M.E., Nordlund, P., Nyman, T., Persson, C., Sagemark, J., Svensson, L., Thorsell, A.G., Tresaugues, L., Van Den Berg, S., Weigelt, J., Holmberg-Schiavone, L., Structural Genomics Consortium (SGC)

Revision History

  • 2011-07-13
    Type: Advisory, Version format compliance