2K33

Solution structure of an N-glycosylated protein using in vitro glycosylation

• PDB DOI: https://doi.org/10.2210/pdb2K33/pdb
• BMRB: 15737

• Classification: MEMBRANE PROTEIN, TRANSPORT PROTEIN
• Organism(s): Campylobacter jejuni
• Expression System: Escherichia coli
• Mutation(s): Yes 


• Deposited: 2008-04-18 Released: 2009-02-03 
• Deposition Author(s): Slynko, V., Schubert, M., Numao, S., Kowarik, M., Aebi, M., Allain, F.H.-T.

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Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Calculated: 1000 
• Conformers Submitted: 20 
• Selection Criteria: structures with the lowest energy 

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content

• Total Structure Weight: 14.17 kDa 
• Atom Count: 996 
• Modelled Residue Count: 116 
• Deposited Residue Count: 116 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
AcrA	A	116	Campylobacter jejuni	Mutation(s): 2  Gene Names: cmeA
UniProt
Find proteins for Q8RTE5 (Campylobacter jejuni) Explore Q8RTE5  Go to UniProtKB:  Q8RTE5

Oligosaccharides

Help

Entity ID: 2
Molecule	Chains	Length	2D Diagram	Glycosylation	3D Interactions
2-acetamido-2-deoxy-alpha-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-alpha-D-galactopyranose-(1-4)-[beta-D-glucopyranose-(1-3)]2-acetamido-2-deoxy-alpha-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-alpha-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-alpha-D-galactopyranose-(1-3)-2,4-bisacetamido-2,4,6-trideoxy-beta-D-glucopyranose	B	7		N/A
Glycosylation Resources
GlyTouCan:  G66397DB GlyCosmos:  G66397DB

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Calculated: 1000 
• Conformers Submitted: 20 
• Selection Criteria: structures with the lowest energy 

Structure Validation

Entry History 

Deposition Data

• Released Date: 2009-02-03 
Deposition Author(s): Slynko, V., Schubert, M., Numao, S., Kowarik, M., Aebi, M., Allain, F.H.-T.

Revision History  

• Version 1.0: 2009-02-03
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Version format compliance
• Version 2.0: 2020-07-29
  Type: Remediation
  Reason: Carbohydrate remediation
  Changes: Atomic model, Data collection, Database references, Derived calculations, Structure summary
• Version 2.1: 2021-10-20
  Changes: Database references, Structure summary