2MU9

Changing ABRA protein peptide to fit the HLA-DR B1*0301 molecule renders it protection-inducing


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 50 
  • Conformers Submitted: 21 
  • Selection Criteria: structures with the least restraint violations 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Changing ABRA protein peptide to fit into the HLA-DRbeta1*0301 molecule renders it protection-inducing.

Salazar, L.M.Alba, M.P.Curtidor, H.Bermudez, A.Vargas, L.E.Rivera, Z.J.Patarroyo, M.E.

(2004) Biochem Biophys Res Commun 322: 119-125

  • DOI: https://doi.org/10.1016/j.bbrc.2004.07.086
  • Primary Citation of Related Structures:  
    2MU9

  • PubMed Abstract: 

    The Plasmodium falciparum acidic-basic repeat antigen represents a potential malarial vaccine candidate. One of this protein's high activity binding peptides, named 2150 ((161)KMNMLKENVDYIQKNQNLFK(180)), is conserved, non-immunogenic, and non-protection-inducing. Analogue peptides whose critical binding residues (in bold) were replaced by amino-acids having similar mass but different charge were synthesized and tested to try to modify such immunological properties. These analogues' HLA-DRbeta1* molecule binding ability were also studied in an attempt to explain their biological mechanisms and correlate binding capacity and immunological function with their three-dimensional structure determined by (1)H NMR. A 3(10) distorted helical structure was identified in protective and immunogenic peptide 24922 whilst alpha-helical structure was found for non-immunogenic, non-protective peptides having differences in alpha-helical position. The changes performed on immunogenic, protection-inducing peptide 24922 allowed it to bind specifically to the HLA-DRbeta1*0301 molecule, suggesting that these changes may lead to better interaction with the MHC Class II-peptide-TCR complex rendering it immunogenic and protective, thus suggesting a new way of developing multi-component, sub-unit-based anti-malarial vaccines.


  • Organizational Affiliation

    Fundación Instituto de Inmunologia de Colombia (FIDIC), Cra 50 No. 26-00, Bogota, Colombia.


Macromolecules

Find similar proteins by:  Sequence   |   3D Structure  

Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
P101/acidic basic repeat antigen20Plasmodium falciparumMutation(s): 0 
UniProt
Find proteins for Q8I5D2 (Plasmodium falciparum (isolate 3D7))
Explore Q8I5D2 
Go to UniProtKB:  Q8I5D2
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8I5D2
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 50 
  • Conformers Submitted: 21 
  • Selection Criteria: structures with the least restraint violations 

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2015-09-16
    Type: Initial release
  • Version 1.1: 2023-06-14
    Changes: Data collection, Database references, Other