2J5H

NMR analysis of mouse CRIPTO CFC domain


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 10 
  • Selection Criteria: LEAST RESTRAINT VIOLATION AND ENERGY 

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This is version 1.3 of the entry. See complete history


Literature

Solution structure of mouse Cripto CFC domain and its inactive variant Trp107Ala.

Calvanese, L.Saporito, A.Marasco, D.D'Auria, G.Minchiotti, G.Pedone, C.Paolillo, L.Falcigno, L.Ruvo, M.

(2006) J Med Chem 49: 7054-7062

  • DOI: https://doi.org/10.1021/jm060772r
  • Primary Citation of Related Structures:  
    2J5H

  • PubMed Abstract: 

    We report here for the first time the solution structures at pH 3 and pH 6 of the synthetic CFC domain of mouse Cripto and of the point mutated variant W107A that is unable to bind to the Alk4 Cripto receptor. NMR data confirm that the CFC domain has a C1-C4, C2-C6, C3-C5 disulfide pattern and show that structures are rather flexible and globally extended, with three noncanonical antiparallel strands. His104 and Trp107 side chains protrude from a protein edge and are strongly exposed to solvent, supporting previous evidence of direct involvement in receptor binding. On the opposite molecule side, several nonpolar residues are gathered, forming a large hydrophobic patch that supposedly acts as interface with the cell membrane or the adjacent EGF-like domain. A second hydrophilic patch surrounding His104 and Trp107 is present only in the wild type variant, suggesting a possible involvement in modulating Alk4 recognition.


  • Organizational Affiliation

    Dipartimento di Chimica, Università Federico II, Complesso Universitario MSA, via Cintia 45, 80126 Napoli, Italy.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
TERATOCARCINOMA-DERIVED GROWTH FACTOR41Mus musculusMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P51865 (Mus musculus)
Explore P51865 
Go to UniProtKB:  P51865
IMPC:  MGI:98658
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UniProt GroupP51865
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 10 
  • Selection Criteria: LEAST RESTRAINT VIOLATION AND ENERGY 

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2006-10-02
    Type: Initial release
  • Version 1.1: 2011-05-08
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2018-05-09
    Changes: Data collection, Database references