Download MendeleyInteractions of D Amino Acids with Streptomyces griseus Aminopeptidase
Reiland, V., Gilboa, R., Spungin-Bialik, A., Schomburg, D., Shoham, Y., Blumberg, S., Shoham, G.To be published.
1TKH
Streptomyces griseus aminopeptidase complexed with D-Phenylalanine
- PDB DOI: https://doi.org/10.2210/pdb1TKH/pdb
- Classification: HYDROLASE
- Organism(s): Streptomyces griseus
- Mutation(s): No
- Deposited: 2004-06-08 Released: 2005-06-14
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.25 Å
- R-Value Free: 0.156
- R-Value Work: 0.114
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Aminopeptidase | 284 | Streptomyces griseus | Mutation(s): 0 EC: 3.4.11 |  | |
UniProt | |||||
Find proteins for P80561 (Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350)) Explore P80561 Go to UniProtKB: P80561 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P80561 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| DPN Query on DPN | E [auth A], F [auth A] | D-PHENYLALANINE C9 H11 N O2 COLNVLDHVKWLRT-MRVPVSSYSA-N |  | ||
| ZN Query on ZN | B [auth A], C [auth A] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |  | ||
| CA Query on CA | D [auth A] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.25 Å
- R-Value Free: 0.156
- R-Value Work: 0.114
- Space Group: P 41 21 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 60.465 | α = 90 |
| b = 60.465 | β = 90 |
| c = 143.637 | γ = 90 |
| Software Name | Purpose |
|---|---|
| SHELX | model building |
| SHELXL-97 | refinement |
| DENZO | data reduction |
| SCALEPACK | data scaling |
| CNS | phasing |
Entry History
Deposition Data
- Released Date: 2005-06-14 Deposition Author(s): Reiland, V., Gilboa, R., Spungin-Bialik, A., Schomburg, D., Shoham, Y., Blumberg, S., Shoham, G.
Revision History (Full details and data files)
- Version 1.0: 2005-06-14
Type: Initial release - Version 1.1: 2008-04-30
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Version format compliance
