1S4J

NMR structure of cross-reactive peptides from Homo sapiens

• PDB DOI: https://doi.org/10.2210/pdb1S4J/pdb
• BMRB: 6106

• Classification: RIBOSOME
• Organism(s): Homo sapiens
• Mutation(s): No 


• Deposited: 2004-01-16 Released: 2004-03-16 
• Deposition Author(s): Soares, M.R., Bisch, P.M., Campos de Carvalho, A.C., Valente, A.P., Almeida, F.C.L.

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Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Calculated: 100 
• Conformers Submitted: 20 
• Selection Criteria: structures with the lowest energy 

Literature

Correlation between conformation and antibody binding: NMR structure of cross-reactive peptides from T. cruzi, human and L. braziliensis

Soares, M.R., Bisch, P.M., Campos De Carvalho, A.C., Valente, A.P., Almeida, F.C.L.

(2004) FEBS Lett 560: 134-140

• PubMed: 14988012 
• DOI: https://doi.org/10.1016/S0014-5793(04)00088-2
• Primary Citation of Related Structures:  
  1S4H, 1S4J


• PubMed Abstract: 
  

  The structure of peptides corresponding to the C-terminal residues from Trypanosoma cruzi (R13), human (H13) and Leishmania braziliensis (A13) ribosomal proteins were determined using nuclear magnetic resonance. Although there is only one amino acid difference between them, the peptides present distinct structures in solution: R13 adopts a random coil conformation while H13 and A13 form a bend. Interaction of these peptides with polyclonal antibodies from chronic Chagas' disease patients and a monoclonal antibody raised against T. cruzi ribosomal P2beta protein was probed by transferred NOE. The results show that the flexibility of R13 is fundamental for the binding to the antibody.

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Organizational Affiliation: 

Instituto de Biofísica Carlos Chagas Filho, Universidade Federal do Rio de Janeiro, 21941-590 Rio de Janeiro, RJ, Brazil.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content

• Total Structure Weight: 1.48 kDa 
• Atom Count: 103 
• Modelled Residue Count: 13 
• Deposited Residue Count: 13 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
60S acidic ribosomal protein P2	A	13	N/A	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P05387 (Homo sapiens) Explore P05387  Go to UniProtKB:  P05387
PHAROS:  P05387 GTEx:  ENSG00000177600

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Calculated: 100 
• Conformers Submitted: 20 
• Selection Criteria: structures with the lowest energy 

Structure Validation

Entry History 

Deposition Data

• Released Date: 2004-03-16 
Deposition Author(s): Soares, M.R., Bisch, P.M., Campos de Carvalho, A.C., Valente, A.P., Almeida, F.C.L.

Revision History  

• Version 1.0: 2004-03-16
  Type: Initial release
  
• Version 1.1: 2008-04-29
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2022-03-02
  Changes: Database references, Derived calculations