1JW1

Crystallization and structure determination of goat lactoferrin at 4.0 resolution: A new form of packing in lactoferrins with a high solvent content in crystals

PDB DOI: https://doi.org/10.2210/pdb1JW1/pdb

Classification: METAL BINDING PROTEIN
Organism(s): Capra hircus
Mutation(s): No

Deposited: 2001-09-02 Released: 2003-04-29
Deposition Author(s): Kumar, P., Yadav, S., Singh, T.P.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 4.00 Å
R-Value Free: 0.328
R-Value Work: 0.228

wwPDB Validation 3D Report Full Report

This is version 1.2 of the entry. See complete history.

Literature

Crystallization and structure determonation of goat lactoferrin at 4.0A resolution: A new form of packing in lactoferrins with a high solvent content in crystals

Kumar, P., Yadav, S., Singh, T.P.

(2002) Indian J Biochem Biophys 39: 16-21

Macromolecule Content

Total Structure Weight: 75.73 kDa
Atom Count: 5,295
Modelled Residue Count: 689
Deposited Residue Count: 689
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
LACTOFERRIN	A	689	Capra hircus	Mutation(s): 0
UniProt
Find proteins for Q29477 (Capra hircus) Explore Q29477 Go to UniProtKB: Q29477
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q29477
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
FE Query on FE Download Ideal Coordinates CCD File SDF format, chain B [auth A] SDF format, chain C [auth A] MOL2 format, chain B [auth A] MOL2 format, chain C [auth A]	B [auth A], C [auth A]	FE (III) ION Fe VTLYFUHAOXGGBS-UHFFFAOYSA-N		Interactions Focus chain B [auth A] Focus chain C [auth A]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 4.00 Å
R-Value Free: 0.328
R-Value Work: 0.228
Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 104.6	α = 90
b = 153.8	β = 90
c = 155.05	γ = 90

Software Package:

Software Name	Purpose
DENZO	data reduction
SCALEPACK	data scaling
AMoRE	phasing
CNS	refinement

Structure Validation

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Entry History

Deposition Data

Released Date: 2003-04-29

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2003-04-29
Type: Initial release
Version 1.1: 2008-04-27
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Version format compliance

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.