11YA | pdb_000011ya

Staphylococcus aureus MurJ R176A mutant


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.60 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Starting Model: in silico
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wwPDB Validation 3D Report Full Report

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This is version 1.0 of the entry. See complete history

Literature

Structures of the lipid II flippase from the monoderm pathogen Staphylococcus aureus.

Li, Y.E.Baron, G.F.Clemons Jr., W.M.

(2026) J Biol Chem : 113516-113516

  • DOI: https://doi.org/10.1016/j.jbc.2026.113516
  • Primary Citation Related Structures: 
    11XX, 11XY, 11XZ, 11YA

  • PubMed Abstract: 

    Peptidoglycan biogenesis requires membrane flippases to translocate lipid-linked precursors across the cytoplasmic membrane for processing. This essential step is mediated by MurJ, the lipid II flippase conserved across all peptidoglycan-producing bacteria. While MurJ from diderm bacteria has been structurally resolved in multiple conformational states, its monoderm homolog remains uncharacterized. Monoderm MurJ homologs exhibit substantial sequence divergence yet retain the same lipid II flipping function and are promising antibiotic targets. Here we report structures of Staphylococcus aureus MurJ (SaMurJ) captured in both outward- and inward-facing conformations. These structures show that SaMurJ adopts the conserved MOP family fold and undergoes conformational transitions consistent with an alternating-access mechanism. Our findings reveal conserved and divergent features of MurJ between diderm and monoderm bacteria that are critical for lipid II flipping and provide a structural framework for probing substrate recognition and specific inhibition.


  • Organizational Affiliation
    • Division of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, California, USA.

Macromolecule Content 

  • Total Structure Weight: 61.91 kDa 
  • Atom Count: 4,303 
  • Modeled Residue Count: 544 
  • Deposited Residue Count: 553 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Polysaccharide biosynthesis protein, putative553Staphylococcus aureus subsp. aureus NCTC 8325Mutation(s): 1 
Gene Names: SAOUHSC_01871
UniProt
Find proteins for Q2FXH6 (Staphylococcus aureus (strain NCTC 8325 / PS 47))
Explore Q2FXH6 
Go to UniProtKB:  Q2FXH6
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ2FXH6
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.60 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX1.21_5207
RECONSTRUCTIONcryoSPARC4.6.2

Structure Validation

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Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesGM114611
The G. Harold and Leila Y. Mathers FoundationUnited Statesto W.M.C.
Chan Zuckerberg InitiativeUnited States--

Revision History  (Full details and data files)

  • Version 1.0: 2026-09-16
    Type: Initial release