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 10PB | pdb_000010pb

TASK-2 L127N at pH 6.5


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.75 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report

Validation slider image for 10PB

This is version 1.1 of the entry. See complete history. 

Literature

Mechanisms of intracellular pH gating and local anesthetic inhibition of the two-pore domain K + channel TASK-2.

Docter, T., Sorum, B., Li, B., Rietmeijer, R.A., Cook, A.S.I., Kotecha, A., Brohawn, S.G.

(2026) Proc Natl Acad Sci U S A 123: e2604873123-e2604873123

  • DOI: https://doi.org/10.1073/pnas.2604873123
  • Primary Citation Related Structures: 
    10OY, 10PB, 10PC, 10PD, 10PF

  • PubMed Abstract: 

    TWIK-related acid-sensitive K+ channel 2 (TASK-2) is a pH sensing two-pore K + (K2P) channel that regulates respiration in brainstem neurons and systemic pH homeostasis in kidney. Despite its physiological importance and implication in disease, the molecular basis for intracellular gating and pharmacological inhibition of TASK-2 is incompletely understood. Here, we combine cryo-EM and single-channel electrophysiology to resolve the mechanisms of TASK-2 gating by intracellular protons and inhibition by the anesthetic bupivacaine. We show protonation of intracellular lysines triggers a unique stacked gating mechanism distinct from other K + channels. Inner helices unwind and domain swap to form a β-zipper, which we call a Z-gate, that seals the cytoplasmic channel entrance. These conformational changes open lateral fenestrations to the membrane that permit lipids to invade the channel cavity and block the pore. Furthermore, we find bupivacaine inhibits the channel by competing with lipids in the cavity site in a state-dependent manner. These results define a paradigm for intracellular gating of K2Ps and provide a structural foundation for designing more potent and selective channel modulators.


  • Organizational Affiliation: 
    • Department of Molecular and Cell Biology, University of California Berkeley, Berkeley, CA 94720.

Macromolecule Content 

  • Total Structure Weight: 117.03 kDa 
  • Atom Count: 4,492 
  • Modeled Residue Count: 527 
  • Deposited Residue Count: 899 
  • Unique protein chains: 2

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Potassium channel TASK2
A, B
344Mus musculusMutation(s): 0 
Gene Names: Kcnk5
UniProt
Find proteins for Q9JK62 (Mus musculus)
Explore Q9JK62 
Go to UniProtKB:  Q9JK62
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9JK62
Sequence Annotations
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Reference Sequence
Find similar proteins by:|  3D Structure
Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
Apolipoprotein A-IC [auth D]211Homo sapiensMutation(s): 0 
Gene Names: APOA1
UniProt & NIH Common Fund Data Resources
Find proteins for P02647 (Homo sapiens)
Explore P02647 
Go to UniProtKB:  P02647
PHAROS:  P02647
GTEx:  ENSG00000118137 
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP02647
Sequence Annotations
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Reference Sequence

Small Molecules

Ligands 2 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
PEE

Query on PEE



Download:Ideal Coordinates CCD File
F [auth A]
G [auth A]
H [auth A]
I [auth A]
J [auth A]
F [auth A],
G [auth A],
H [auth A],
I [auth A],
J [auth A],
K [auth A],
L [auth A],
N [auth B],
O [auth B],
P [auth B],
Q [auth B],
R [auth B],
S [auth B],
T [auth B],
U [auth B],
V [auth B],
W [auth B],
X [auth B],
Y [auth D],
Z [auth D]
1,2-dioleoyl-sn-glycero-3-phosphoethanolamine
C41 H78 N O8 P
MWRBNPKJOOWZPW-NYVOMTAGSA-N
K

Query on K



Download:Ideal Coordinates CCD File
D [auth A],
E [auth A],
M [auth B]
POTASSIUM ION
K
NPYPAHLBTDXSSS-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.75 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX1.21.2_5419
RECONSTRUCTIONcryoSPARC

Structure Validation

View Full Validation Report



Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesGM145869

Revision History  (Full details and data files)

  • Version 1.0: 2026-10-07
    Type: Initial release
  • Version 1.1: 2026-10-21
    Changes: Data collection, Database references