PRD_002569

Rufomycin analog

Created:	2025-03-29
Last modified:	2025-04-16

PRD_002569 is described in the Biologically Interesting Molecule Reference Dictionary (BIRD).

The representative PDB ID is PDB_00009DIN.

Find Related PDB Entries
1 entry where PRD_002569 is present

Chemical Details
Formal Charge	0
Atom Count	167
Chiral Atom Count	9
Bond Count	171
Aromatic Bond Count	16

Toggle Hydrogen Toggle Labels

Chemical Component Summary
Name	Rufomycin analog
Systematic Name (OpenEye OEToolkits)	n/a
Formula	C₅₈ H₈₇ Cl N₉ O₁₂
Molecular Weight	1,137.817
Type	PEPTIDE-LIKE

Chemical Descriptors
Type	Program	Version	Descriptor
SMILES	ACDLabs	14.52	[O-][N+](=O)c1cc(ccc1O)CC1NC(=O)C(CC(C)C)N(C)C(=O)C(NC(=O)C(CCCC)NC(=O)C(CC(C)C)N2C(OCCCC)C(C)CC(N(C)C(=O)C(C)NC1=O)C2O)Cc1cn(c2ccccc21)C(C)(C)C(O)CCl
SMILES	CACTVS	3.385	CCCCO[CH]1[CH](C)C[CH]2[C](O)[N]1[CH](CC(C)C)C(=O)N[CH](CCCC)C(=O)N[CH](Cc3cn(c4ccccc34)C(C)(C)[CH](O)CCl)C(=O)N(C)[CH](CC(C)C)C(=O)N[CH](Cc5ccc(O)c(c5)[N+]([O-])=O)C(=O)N[CH](C)C(=O)N2C
SMILES	OpenEye OEToolkits	3.1.0.0	CCCCC1C(=O)NC(C(=O)N(C(C(=O)NC(C(=O)NC(C(=O)N(C2CC(C(N([C]2O)C(C(=O)N1)CC(C)C)OCCCC)C)C)C)Cc3ccc(c(c3)[N+](=O)[O-])O)CC(C)C)C)Cc4cn(c5c4cccc5)C(C)(C)C(CCl)O
Canonical SMILES	CACTVS	3.385	CCCCO[C@@H]1[C@@H](C)C[C@H]2[C](O)[N@]1[C@@H](CC(C)C)C(=O)N[C@@H](CCCC)C(=O)N[C@@H](Cc3cn(c4ccccc34)C(C)(C)[C@H](O)CCl)C(=O)N(C)[C@@H](CC(C)C)C(=O)N[C@@H](Cc5ccc(O)c(c5)[N+]([O-])=O)C(=O)N[C@@H](C)C(=O)N2C
Canonical SMILES	OpenEye OEToolkits	3.1.0.0	CCCC[C@H]1C(=O)N[C@H](C(=O)N([C@H](C(=O)N[C@H](C(=O)N[C@H](C(=O)N([C@H]2C[C@@H](C(N([C]2O)[C@H](C(=O)N1)CC(C)C)OCCCC)C)C)C)Cc3ccc(c(c3)[N+](=O)[O-])O)CC(C)C)C)Cc4cn(c5c4cccc5)C(C)(C)[C@@H](CCl)O

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.