PRD_002489

lipid II mimetic, LPATA

Created:2021-12-23
Last modified:  2023-11-03

PRD_002489 is described in the Biologically Interesting Molecule Reference Dictionary (BIRD).

The representative PDB ID is 7T8Y.

Chemical Details

Formal Charge0
Atom Count168
Chiral Atom Count12
Bond Count169
Aromatic Bond Count6
Toggle HydrogenToggle Labels

Chemical Component Summary

Namelipid II mimetic, LPATA
Systematic Name (OpenEye OEToolkits)[(5~{S})-5-[[(4~{R})-4-[[(2~{S})-2-acetamidopropanoyl]amino]-5-azanyl-5-oxidanylidene-pentanoyl]amino]-6-oxidanylidene-6-[[(2~{R})-1-oxidanylidene-1-[[(2~{R})-1-oxidanyl-1-oxidanylidene-propan-2-yl]amino]propan-2-yl]amino]hexyl]-[(2~{S})-2-[[(2~{S})-2-[[(2~{S},3~{R})-2-[[(2~{S})-2-[[(2~{S})-1-[(2~{S})-2-[(2-aminophenyl)carbonylamino]-4-methyl-pentanoyl]pyrrolidin-2-yl]carbonylamino]propanoyl]amino]-3-oxidanyl-butanoyl]amino]propanoyl]amino]propanoyl]azanium
FormulaC53 H85 N14 O16
Molecular Weight1,174.326
TypePEPTIDE-LIKE

Chemical Descriptors

TypeProgramVersionDescriptor
SMILESACDLabs12.01O=C(NC(C)C(=O)NC(C(=O)NC(C)C(=O)NC(C)C(=O)[NH2+]CCCCC(NC(=O)CCC(NC(=O)C(C)NC(C)=O)C(N)=O)C(=O)NC(C)C(=O)NC(C)C(=O)O)C(C)O)C1CCCN1C(=O)C(CC(C)C)NC(=O)c1ccccc1N
SMILESCACTVS3.385CC(C)C[CH](NC(=O)c1ccccc1N)C(=O)N2CCC[CH]2C(=O)N[CH](C)C(=O)N[CH]([CH](C)O)C(=O)N[CH](C)C(=O)N[CH](C)C(=O)[NH2+]CCCC[CH](NC(=O)CC[CH](NC(=O)[CH](C)NC(C)=O)C(N)=O)C(=O)N[CH](C)C(=O)N[CH](C)C(O)=O
SMILESOpenEye OEToolkits2.0.7CC(C)CC(C(=O)N1CCCC1C(=O)NC(C)C(=O)NC(C(C)O)C(=O)NC(C)C(=O)NC(C)C(=O)[NH2+]CCCCC(C(=O)NC(C)C(=O)NC(C)C(=O)O)NC(=O)CCC(C(=O)N)NC(=O)C(C)NC(=O)C)NC(=O)c2ccccc2N
Canonical SMILESCACTVS3.385 CC(C)C[C@H](NC(=O)c1ccccc1N)C(=O)N2CCC[C@H]2C(=O)N[C@@H](C)C(=O)N[C@@H]([C@@H](C)O)C(=O)N[C@@H](C)C(=O)N[C@@H](C)C(=O)[NH2+]CCCC[C@H](NC(=O)CC[C@@H](NC(=O)[C@H](C)NC(C)=O)C(N)=O)C(=O)N[C@H](C)C(=O)N[C@H](C)C(O)=O
Canonical SMILESOpenEye OEToolkits2.0.7 C[C@H]([C@@H](C(=O)N[C@@H](C)C(=O)N[C@@H](C)C(=O)[NH2+]CCCC[C@@H](C(=O)N[C@H](C)C(=O)N[C@H](C)C(=O)O)NC(=O)CC[C@H](C(=O)N)NC(=O)[C@H](C)NC(=O)C)NC(=O)[C@H](C)NC(=O)[C@@H]1CCCN1C(=O)[C@H](CC(C)C)NC(=O)c2ccccc2N)O
InChIInChI1.06 InChI=1S/C53H84N14O16/c1-25(2)24-38(65-48(77)34-16-11-12-17-35(34)54)52(81)67-23-15-19-39(67)50(79)60-30(7)47(76)66-41(32(9)68)51(80)61-29(6)44(73)58-26(3)43(72)56-22-14-13-18-37(49(78)59-28(5)45(74)62-31(8)53(82)83)63-40(70)21-20-36(42(55)71)64-46(75)27(4)57-33(10)69/h11-12,16-17,25-32,36-39,41,68H,13-15,18-24,54H2,1-10H3,(H2,55,71)(H,56,72)(H,57,69)(H,58,73)(H,59,78)(H,60,79)(H,61,80)(H,62,74)(H,63,70)(H,64,75)(H,65,77)(H,66,76)(H,82,83)/p+1/t26-,27-,28+,29-,30-,31+,32+,36+,37-,38-,39-,41-/m0/s1
InChIKeyInChI1.06 MWNSMXOOHKKRDC-QYUXVVCRSA-O