PRD_002419

Cyclomarin A

Created:2022-07-22
Last modified:  2023-03-29

PRD_002419 is described in the Biologically Interesting Molecule Reference Dictionary (BIRD).

The representative PDB ID is 8AD9.

Chemical Details

Formal Charge0
Atom Count157
Chiral Atom Count12
Bond Count161
Aromatic Bond Count16
Toggle HydrogenToggle Labels

Chemical Component Summary

NameCyclomarin A
Systematic Name (OpenEye OEToolkits)(3~{S},6~{S},9~{S},12~{S},15~{S},18~{S},21~{S})-15-[(~{R})-methoxy(phenyl)methyl]-1,10,18-trimethyl-21-[(2~{R})-2-methyl-3-oxidanyl-propyl]-6-[(2~{R})-4-methylpent-3-en-2-yl]-9-(2-methylpropyl)-3-[(~{R})-oxidanyl-[1-[2-[(2~{S})-oxiran-2-yl]propan-2-yl]indol-3-yl]methyl]-12-propan-2-yl-1,4,7,10,13,16,19-heptazacyclohenicosane-2,5,8,11,14,17,20-heptone
FormulaC56 H82 N8 O11
Molecular Weight1,043.297
TypePEPTIDE-LIKE

Chemical Descriptors

TypeProgramVersionDescriptor
SMILESCACTVS3.385CO[CH]([CH]1NC(=O)[CH](C)NC(=O)[CH](C[CH](C)CO)N(C)C(=O)[CH](NC(=O)[CH](NC(=O)[CH](CC(C)C)N(C)C(=O)[CH](NC1=O)C(C)C)[CH](C)C=C(C)C)[CH](O)c2cn(c3ccccc23)C(C)(C)[CH]4CO4)c5ccccc5
SMILESOpenEye OEToolkits2.0.7CC1C(=O)NC(C(=O)NC(C(=O)N(C(C(=O)NC(C(=O)NC(C(=O)N(C(C(=O)N1)CC(C)CO)C)C(c2cn(c3c2cccc3)C(C)(C)C4CO4)O)C(C)C=C(C)C)CC(C)C)C)C(C)C)C(c5ccccc5)OC
Canonical SMILESCACTVS3.385 CO[C@@H]([C@@H]1NC(=O)[C@H](C)NC(=O)[C@H](C[C@@H](C)CO)N(C)C(=O)[C@@H](NC(=O)[C@@H](NC(=O)[C@H](CC(C)C)N(C)C(=O)[C@@H](NC1=O)C(C)C)[C@H](C)C=C(C)C)[C@H](O)c2cn(c3ccccc23)C(C)(C)[C@H]4CO4)c5ccccc5
Canonical SMILESOpenEye OEToolkits2.0.7 C[C@H]1C(=O)N[C@H](C(=O)N[C@H](C(=O)N([C@H](C(=O)N[C@H](C(=O)N[C@H](C(=O)N([C@H](C(=O)N1)C[C@@H](C)CO)C)[C@@H](c2cn(c3c2cccc3)C(C)(C)[C@H]4CO4)O)[C@H](C)C=C(C)C)CC(C)C)C)C(C)C)[C@@H](c5ccccc5)OC
InChIInChI1.06 InChI=1S/C56H82N8O11/c1-30(2)24-34(8)44-52(70)60-45(47(66)38-27-64(56(10,11)42-29-75-42)39-23-19-18-22-37(38)39)55(73)63(13)41(26-33(7)28-65)50(68)57-35(9)49(67)61-46(48(74-14)36-20-16-15-17-21-36)53(71)58-43(32(5)6)54(72)62(12)40(25-31(3)4)51(69)59-44/h15-24,27,31-35,40-48,65-66H,25-26,28-29H2,1-14H3,(H,57,68)(H,58,71)(H,59,69)(H,60,70)(H,61,67)/t33-,34-,35+,40+,41+,42-,43+,44+,45+,46+,47-,48-/m1/s1
InChIKeyInChI1.06 WCNJVJCYRBJSLC-RJAUBPBCSA-N

Related Resource References

Resource NameReference
PubChem 167530326