PRD_002404

Dynobactin A

PRD_002404 is described in the Biologically Interesting Molecule Reference Dictionary (BIRD).

The representative PDB ID is 7R1V.

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Chemical Component Summary
Name	Dynobactin A
Identifiers	[[[(4~{S})-4-[[(3~{S},6~{S},9~{S})-9-[[(2~{S})-2-[[(6~{S},9~{S},12~{S},15~{S})-16-aminocarbonyl-6-azanyl-9-(2-azanyl-2-oxidanylidene-ethyl)-12-(hydroxymethyl)-7,10,13-tris(oxidanylidene)-2,8,11,14-tetrazatricyclo[15.3.1.0^{4,20}]henicosa-1(20),3,17(21),18-tetraen-15-yl]carbonylamino]-3-methyl-butanoyl]amino]-6-(hydroxymethyl)-2-(4-hydroxyphenyl)-5,8-bis(oxidanylidene)-1,4,7-triaza-12-azoniabicyclo[9.2.1]tetradeca-11(14),12-dien-3-yl]carbonylamino]-5-oxidanylidene-5-[[(2~{S})-1-oxidanyl-1-oxidanylidene-3-phenyl-propan-2-yl]amino]pentyl]amino]-azanyl-methylidene]azanium
Formula	C₆₀ H₇₈ N₁₈ O₁₆
Molecular Weight	1,307.372
Type	PEPTIDE-LIKE
Isomeric SMILES	CC(C)[C@@H](C(=O)N[C@H]1Cc2cn(c[nH+]2)C([C@H](NC(=O)[C@@H](NC1=O)CO)C(=O)N[C@@H](CCCNC(=[NH2+])N)C(=O)N[C@@H](Cc3ccccc3)C(=O)O)c4ccc(cc4)O)NC(=O)[C@@H]5C(c6ccc7c(c6)[nH]cc7C[C@@H](C(=O)N[C@H](C(=O)N[C@H](C(=O)N5)CO)CC(=O)N)N)C(=O)N
InChI	InChI=1S/C60H76N18O16/c1-27(2)45(75-57(91)46-44(49(63)83)30-12-15-34-31(22-67-37(34)19-30)18-35(61)50(84)70-39(21-43(62)82)53(87)74-41(24-79)54(88)76-46)56(90)71-38-20-32-23-78(26-68-32)48(29-10-13-33(81)14-11-29)47(77-55(89)42(25-80)73-52(38)86)58(92)69-36(9-6-16-66-60(64)65)51(85)72-40(59(93)94)17-28-7-4-3-5-8-28/h3-5,7-8,10-15,19,22-23,26-27,35-36,38-42,44-48,67,79-81H,6,9,16-18,20-21,24-25,61H2,1-2H3,(H2,62,82)(H2,63,83)(H,69,92)(H,70,84)(H,71,90)(H,72,85)(H,73,86)(H,74,87)(H,75,91)(H,76,88)(H,77,89)(H,93,94)(H4,64,65,66)/p+2/t35-,36-,38-,39-,40-,41-,42-,44+,45-,46-,47-,48+/m0/s1
InChIKey	HWDDFJOGMWPPAS-GANBONKGSA-P
Composition	Polymer Sequences: TRP-ASN-SER-ASN-VAL-HIS-SER-TYR-ARG-PHE
BIRD class	ANTIBIOTIC, ANTIMICROBIAL
Represented As	POLYMER
Compound Details	n/a
Description	n/a

Chemical Details
Formal Charge	0
Atom Count	172
Chiral Atom Count	10
Bond Count	178
Aromatic Bond Count	27

Related Resource References

Resource Name	Reference
PubChem	164946658

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.