PRD_001041

TMC-95A mimic ligand yCP:4e

Created:	2013-04-17
Last modified:	2023-11-03

PRD_001041 is described in the Biologically Interesting Molecule Reference Dictionary (BIRD).

The representative PDB ID is 4JSQ.

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1 entry where PRD_001041 is present

Chemical Details
Formal Charge	0
Atom Count	163
Chiral Atom Count	4
Bond Count	167
Aromatic Bond Count	24

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Chemical Component Summary
Name	TMC-95A mimic ligand yCP:4e
Systematic Name (OpenEye OEToolkits)	6-azanyl-N-[6-oxidanylidene-6-[[6-oxidanylidene-6-[[6-oxidanylidene-6-[[(2S)-1-oxidanylidene-1-[[(2S)-1-oxidanylidene-1-[[(2S)-1-oxidanylidene-3-[(3R)-3-oxidanyl-2-oxidanylidene-1H-indol-3-yl]-1-[(phenylmethyl)amino]propan-2-yl]amino]propan-2-yl]amino]-3-(4-phenylmethoxyphenyl)propan-2-yl]amino]hexyl]amino]hexyl]amino]hexyl]hexanamide
Formula	C₆₁ H₈₃ N₉ O₁₀
Molecular Weight	1,102.366
Type	PEPTIDE-LIKE

Chemical Descriptors
Type	Program	Version	Descriptor
SMILES	ACDLabs	12.01	O=C(NCCCCCC(=O)NCCCCCC(=O)NCCCCCC(=O)NC(C(=O)NC(C(=O)NC(C(=O)NCc1ccccc1)CC3(O)c2ccccc2NC3=O)C)Cc5ccc(OCc4ccccc4)cc5)CCCCCN
SMILES	CACTVS	3.370	C[CH](NC(=O)[CH](Cc1ccc(OCc2ccccc2)cc1)NC(=O)CCCCCNC(=O)CCCCCNC(=O)CCCCCNC(=O)CCCCCN)C(=O)N[CH](C[C]3(O)C(=O)Nc4ccccc34)C(=O)NCc5ccccc5
SMILES	OpenEye OEToolkits	1.7.6	CC(C(=O)NC(CC1(c2ccccc2NC1=O)O)C(=O)NCc3ccccc3)NC(=O)C(Cc4ccc(cc4)OCc5ccccc5)NC(=O)CCCCCNC(=O)CCCCCNC(=O)CCCCCNC(=O)CCCCCN
Canonical SMILES	CACTVS	3.370	C[C@H](NC(=O)[C@H](Cc1ccc(OCc2ccccc2)cc1)NC(=O)CCCCCNC(=O)CCCCCNC(=O)CCCCCNC(=O)CCCCCN)C(=O)N[C@@H](C[C@]3(O)C(=O)Nc4ccccc34)C(=O)NCc5ccccc5
Canonical SMILES	OpenEye OEToolkits	1.7.6	C[C@@H](C(=O)N[C@@H](C[C@]1(c2ccccc2NC1=O)O)C(=O)NCc3ccccc3)NC(=O)[C@H](Cc4ccc(cc4)OCc5ccccc5)NC(=O)CCCCCNC(=O)CCCCCNC(=O)CCCCCNC(=O)CCCCCN
InChI	InChI	1.03	InChI=1S/C61H83N9O10/c1-44(57(75)69-52(58(76)66-42-46-22-8-2-9-23-46)41-61(79)49-26-16-17-27-50(49)70-60(61)78)67-59(77)51(40-45-32-34-48(35-33-45)80-43-47-24-10-3-11-25-47)68-56(74)31-15-7-21-39-65-55(73)30-14-6-20-38-64-54(72)29-13-5-19-37-63-53(71)28-12-4-18-36-62/h2-3,8-11,16-17,22-27,32-35,44,51-52,79H,4-7,12-15,18-21,28-31,36-43,62H2,1H3,(H,63,71)(H,64,72)(H,65,73)(H,66,76)(H,67,77)(H,68,74)(H,69,75)(H,70,78)/t44-,51-,52-,61+/m0/s1
InChIKey	InChI	1.03	RPFCHQZJHSNSPO-CBLZAQHOSA-N

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.