PRD_000217

Daptomycin

Created:2012-02-08
Last modified:  2023-09-20

PRD_000217 is described in the Biologically Interesting Molecule Reference Dictionary (BIRD).

The representative PDB ID is 1XT7.

Chemical Details

Formal Charge0
Atom Count216
Chiral Atom Count13
Bond Count219
Aromatic Bond Count16
Toggle HydrogenToggle Labels

Chemical Component Summary

NameDaptomycin
Systematic Name (OpenEye OEToolkits)(3S)-4-[[(3S,6S,9R,15S,18R,21S,24S,30S,31R)-3-[2-(2-aminophenyl)-2-oxidanylidene-ethyl]-24-(3-azanylpropyl)-9-(hydroxymethyl)-15,21-bis(2-hydroxy-2-oxoethyl)-18,31-dimethyl-2,5,8,11,14,17,20,23,26,29-decakis(oxidanylidene)-6-[(2R)-4-oxidanyl-4-oxidanylidene-butan-2-yl]-1-oxa-4,7,10,13,16,19,22,25,28-nonazacyclohentriacont-30-yl]amino]-3-[[(2S)-4-azanyl-2-[[(2S)-2-(decanoylamino)-3-(1H-indol-3-yl)propanoyl]amino]-4-oxidanylidene-butanoyl]amino]-4-oxidanylidene-butanoic acid
FormulaC72 H101 N17 O26
Molecular Weight1,620.671
TypePEPTIDE-LIKE

Chemical Descriptors

TypeProgramVersionDescriptor
SMILESACDLabs12.01O=C(NC(C(=O)NC(C(=O)NC(C(=O)NC1C(=O)NCC(=O)NC(C(=O)NC(C(=O)NC(C(=O)NC(C(=O)NCC(=O)NC(C(=O)NC(C(=O)NC(C(=O)OC1C)CC(=O)c2ccccc2N)C(C)CC(=O)O)CO)CC(=O)O)C)CC(=O)O)CCCN)CC(=O)O)CC(=O)N)Cc3cnc4ccccc34)CCCCCCCCC
SMILESCACTVS3.370CCCCCCCCCC(=O)N[CH](Cc1c[nH]c2ccccc12)C(=O)N[CH](CC(N)=O)C(=O)N[CH](CC(O)=O)C(=O)N[CH]3[CH](C)OC(=O)[CH](CC(=O)c4ccccc4N)NC(=O)[CH](NC(=O)[CH](CO)NC(=O)CNC(=O)[CH](CC(O)=O)NC(=O)[CH](C)NC(=O)[CH](CC(O)=O)NC(=O)[CH](CCCN)NC(=O)CNC3=O)[CH](C)CC(O)=O
SMILESOpenEye OEToolkits1.7.6CCCCCCCCCC(=O)NC(Cc1c[nH]c2c1cccc2)C(=O)NC(CC(=O)N)C(=O)NC(CC(=O)O)C(=O)NC3C(OC(=O)C(NC(=O)C(NC(=O)C(NC(=O)CNC(=O)C(NC(=O)C(NC(=O)C(NC(=O)C(NC(=O)CNC3=O)CCCN)CC(=O)O)C)CC(=O)O)CO)C(C)CC(=O)O)CC(=O)c4ccccc4N)C
Canonical SMILESCACTVS3.370 CCCCCCCCCC(=O)N[C@@H](Cc1c[nH]c2ccccc12)C(=O)N[C@@H](CC(N)=O)C(=O)N[C@@H](CC(O)=O)C(=O)N[C@H]3[C@@H](C)OC(=O)[C@H](CC(=O)c4ccccc4N)NC(=O)[C@@H](NC(=O)[C@@H](CO)NC(=O)CNC(=O)[C@H](CC(O)=O)NC(=O)[C@@H](C)NC(=O)[C@H](CC(O)=O)NC(=O)[C@H](CCCN)NC(=O)CNC3=O)[C@H](C)CC(O)=O
Canonical SMILESOpenEye OEToolkits1.7.6 CCCCCCCCCC(=O)N[C@@H](Cc1c[nH]c2c1cccc2)C(=O)N[C@@H](CC(=O)N)C(=O)N[C@@H](CC(=O)O)C(=O)N[C@H]3[C@H](OC(=O)[C@@H](NC(=O)[C@@H](NC(=O)[C@H](NC(=O)CNC(=O)[C@@H](NC(=O)[C@H](NC(=O)[C@@H](NC(=O)[C@@H](NC(=O)CNC3=O)CCCN)CC(=O)O)C)CC(=O)O)CO)[C@H](C)CC(=O)O)CC(=O)c4ccccc4N)C
InChIInChI1.03 InChI=1S/C72H101N17O26/c1-5-6-7-8-9-10-11-22-53(93)81-44(25-38-31-76-42-20-15-13-17-39(38)42)66(108)84-45(27-52(75)92)67(109)86-48(30-59(102)103)68(110)89-61-37(4)115-72(114)49(26-51(91)40-18-12-14-19-41(40)74)87-71(113)60(35(2)24-56(96)97)88-69(111)50(34-90)82-55(95)32-77-63(105)46(28-57(98)99)83-62(104)36(3)79-65(107)47(29-58(100)101)85-64(106)43(21-16-23-73)80-54(94)33-78-70(61)112/h12-15,17-20,31,35-37,43-50,60-61,76,90H,5-11,16,21-30,32-34,73-74H2,1-4H3,(H2,75,92)(H,77,105)(H,78,112)(H,79,107)(H,80,94)(H,81,93)(H,82,95)(H,83,104)(H,84,108)(H,85,106)(H,86,109)(H,87,113)(H,88,111)(H,89,110)(H,96,97)(H,98,99)(H,100,101)(H,102,103)/t35-,36-,37-,43+,44+,45+,46+,47+,48+,49+,50-,60+,61+/m1/s1
InChIKeyInChI1.03 DOAKLVKFURWEDJ-RWDRXURGSA-N

Related Resource References

Resource NameReference
PubChem 16134395
ChEMBL CHEMBL387675
ChEBI CHEBI:600103