GDP: GUANOSINE-5'-DIPHOSPHATE
GDP is a Ligand Of Interest in 8DB5 designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 8DB5_GDP_C_201 | 96% | 41% | 0.069 | 0.977 | 1.14 | 1.15 | 2 | 3 | 0 | 0 | 100% | 1 |
| 8DB5_GDP_G_201 | 95% | 46% | 0.07 | 0.976 | 1.13 | 0.96 | 3 | 1 | 0 | 0 | 100% | 1 |
| 8DB5_GDP_E_201 | 94% | 37% | 0.076 | 0.977 | 1.11 | 1.37 | 1 | 5 | 0 | 0 | 100% | 1 |
| 8DB5_GDP_E_202 | 91% | 38% | 0.081 | 0.967 | 1.17 | 1.27 | 2 | 4 | 0 | 0 | 100% | 1 |
| 8DB5_GDP_A_201 | 90% | 40% | 0.087 | 0.971 | 1.03 | 1.31 | 1 | 5 | 0 | 0 | 100% | 1 |
| 8DB5_GDP_D_201 | 89% | 45% | 0.083 | 0.963 | 0.9 | 1.22 | 1 | 2 | 0 | 0 | 100% | 1 |
| 8DB5_GDP_B_201 | 84% | 40% | 0.095 | 0.957 | 0.94 | 1.38 | 2 | 4 | 1 | 0 | 100% | 1 |
| 8DB5_GDP_H_201 | 83% | 42% | 0.095 | 0.953 | 1.06 | 1.18 | 2 | 3 | 0 | 0 | 100% | 1 |
| 8DCO_GDP_B_201 | 96% | 43% | 0.064 | 0.975 | 0.98 | 1.21 | 2 | 3 | 0 | 0 | 100% | 1 |
| 1TVK_GDP_B_1500 | 100% | 23% | 0.012 | 0.999 | 2.28 | 0.95 | 3 | 2 | 8 | 0 | 100% | 1 |
| 9BL0_GDP_A_201 | 100% | 46% | 0.016 | 0.998 | 0.96 | 1.11 | 1 | 2 | 1 | 0 | 100% | 1 |
| 9C3K_GDP_A_201 | 100% | 39% | 0.016 | 0.998 | 1.17 | 1.21 | 1 | 2 | 1 | 0 | 100% | 1 |
| 9C3L_GDP_A_201 | 100% | 49% | 0.021 | 0.997 | 0.91 | 1.04 | 1 | 1 | 0 | 0 | 100% | 1 |
| 9C3N_GDP_A_202 | 100% | 38% | 0.017 | 0.998 | 1.36 | 1.06 | 3 | 1 | 0 | 0 | 100% | 1 |
