GDP: GUANOSINE-5'-DIPHOSPHATE
GDP is a Ligand Of Interest in 6YM1 designated by the Author
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 6YM1_GDP_A_401 | 99% | 27% | 0.039 | 0.99 | 1.27 | 1.58 | 4 | 6 | 0 | 0 | 100% | 1 |
| 1RQ7_GDP_A_380 | 99% | 41% | 0.043 | 0.984 | 0.73 | 1.45 | - | 6 | 0 | 0 | 100% | 1 |
| 5V68_GDP_B_401 | 94% | 26% | 0.063 | 0.97 | 1.21 | 1.69 | 4 | 6 | 0 | 0 | 100% | 1 |
| 4KWE_GDP_C_1000 | 87% | 25% | 0.06 | 0.936 | 1.18 | 1.74 | 3 | 5 | 0 | 0 | 100% | 1 |
| 6Y1U_GDP_A_409 | 83% | 25% | 0.083 | 0.945 | 1.27 | 1.68 | 3 | 10 | 1 | 0 | 100% | 1 |
| 1TVK_GDP_B_1500 | 100% | 32% | 0.012 | 0.999 | 1.95 | 0.71 | 1 | 1 | 8 | 0 | 100% | 1 |
| 2CNW_GDP_A_1001 | 100% | 24% | 0.014 | 0.998 | 1.16 | 1.84 | 3 | 9 | 0 | 0 | 100% | 1 |
| 3ZY3_GDP_A_1384 | 100% | 26% | 0.014 | 0.998 | 1.13 | 1.74 | 3 | 8 | 1 | 0 | 100% | 1 |
| 5V9L_GDP_A_201 | 100% | 35% | 0.014 | 0.998 | 1.01 | 1.42 | 1 | 5 | 0 | 0 | 100% | 1 |
| 6EG8_GDP_K_401 | 100% | 25% | 0.015 | 0.999 | 1.16 | 1.76 | 3 | 7 | 0 | 0 | 100% | 1 |
