XYP: beta-D-xylopyranose
XYP is a Ligand Of Interest in 6N4Z designated by the RCSB
| Best-fitted instance in this entry | |
| Other instances in this entry |
| Best-fitted instance in this entry | |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry | |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 6N4Z_XYP_A_413 | 67% | 45% | 0.109 | 0.92 | 1.6 | 0.46 | 3 | - | 0 | 0 | 100% | 0.78 |
| 6N4Z_XYP_A_414 | 56% | 33% | 0.126 | 0.896 | 1.67 | 0.92 | 2 | - | 0 | 0 | 100% | 0.79 |
| 6N4Z_XYP_A_412 | 55% | 30% | 0.124 | 0.891 | 1.73 | 0.98 | 3 | 1 | 0 | 0 | 100% | 0.92 |
| 6N4Z_XYP_A_411 | 50% | 32% | 0.153 | 0.905 | 1.73 | 0.89 | 3 | 1 | 1 | 0 | 100% | 0.73 |
| 6N4Z_XYP_A_418 | 47% | 43% | 0.146 | 0.884 | 1.56 | 0.59 | 2 | - | 0 | 0 | 100% | 0.66 |
| 6N4Z_XYP_A_417 | 42% | 34% | 0.144 | 0.864 | 1.7 | 0.83 | 3 | 1 | 1 | 0 | 100% | 0.87 |
| 6N4Z_XYP_A_415 | 36% | 27% | 0.152 | 0.845 | 1.66 | 1.21 | 2 | 2 | 0 | 0 | 100% | 0.9 |
| 6N4Z_XYP_A_416 | 34% | 40% | 0.158 | 0.842 | 1.7 | 0.6 | 3 | - | 1 | 0 | 100% | 0.79 |
| 6N4Z_XYP_A_419 | 11% | 31% | 0.24 | 0.774 | 1.66 | 1.01 | 3 | 1 | 0 | 0 | 100% | 0.78 |
| 6N4W_XYP_A_414 | 78% | 40% | 0.092 | 0.938 | 1.57 | 0.68 | 3 | - | 0 | 0 | 100% | 0.78 |
| 5UUB_XYP_A_419 | 71% | 27% | 0.098 | 0.919 | 1.87 | 1 | 2 | - | 0 | 0 | 100% | 0.84 |
| 5UUA_XYP_A_416 | 65% | 41% | 0.101 | 0.904 | 1.4 | 0.82 | 1 | - | 0 | 0 | 100% | 0.86 |
| 5UU9_XYP_A_409 | 57% | 43% | 0.116 | 0.89 | 1.42 | 0.73 | 1 | - | 1 | 0 | 100% | 0.8 |
| 5UN3_XYP_A_355 | 48% | 37% | 0.131 | 0.874 | 1.76 | 0.67 | 2 | - | 1 | 0 | 100% | 0.88 |
| 4PMY_XYP_A_401 | 100% | 73% | 0.017 | 0.996 | 0.47 | 0.45 | - | - | 0 | 0 | 100% | 1 |
| 1OD8_XYP_A_1311 | 100% | 64% | 0.027 | 0.992 | 0.69 | 0.55 | - | - | 0 | 0 | 100% | 1 |
| 3FYU_XYP_C_1001 | 100% | 48% | 0.033 | 0.993 | 1.11 | 0.8 | - | - | 0 | 0 | 100% | 1 |
| 5L6G_XYP_A_510 | 100% | 65% | 0.033 | 0.988 | 0.42 | 0.77 | - | - | 0 | 0 | 100% | 1 |
| 1W9T_XYP_B_1148 | 100% | 20% | 0.022 | 0.994 | 1.19 | 2.06 | 1 | 5 | 6 | 0 | 90% | 1 |














