Ligand validation:6DNA

PLP: PYRIDOXAL-5'-PHOSPHATE

PLP is a Ligand Of Interest in 6DNA designated by the RCSB

	Best-fitted instance in this entry
	Other instances in this entry

	Best-fitted instance in this entry
	Best-fitted PDB instances with same target (top 5)

	Best-fitted instance in this entry
	Best-fitted PDB instances with different target (top 5)

Identifier	Ranking for goodness of fit	Ranking for geometry	Real space R factor	Real space correlation coefficient	RMSZ-bond-length	RMSZ-bond-angle	Outliers of bond length	Outliers of bond angle	Atomic clashes	Stereochemical errors	Model completeness	Average occupancy
6DNA_PLP_D_502	22%	11%	0.285	0.901	2.42	1.93	3	6	2	0	100%	0.875
6DNA_PLP_F_501	15%	10%	0.355	0.919	2.73	1.81	3	7	3	0	100%	0.875
6DNA_PLP_E_501	6%	8%	0.374	0.811	2.75	2.01	3	5	6	0	100%	0.8
6DNA_PLP_C_501	3%	11%	0.456	0.812	2.8	1.6	3	6	2	0	100%	0.8125
6DNA_PLP_B_502	3%	11%	0.465	0.801	2.9	1.45	3	2	2	0	100%	0.8125
6DNA_PLP_A_502	2%	9%	0.562	0.806	2.9	1.81	3	5	1	0	100%	0.8125
3II0_PLP_D_4	87%	25%	0.114	0.987	1.14	2.05	1	6	0	0	100%	1
6DND_PLP_B_502	67%	8%	0.162	0.973	2.89	1.97	6	6	4	0	100%	0.875
6LIG_PLP_B_501	44%	38%	0.22	0.951	1.18	1.3	1	3	0	0	100%	1
2BIE_PLP_B_1361	100%	32%	0.039	0.989	1.43	1.39	4	3	1	0	100%	0.9375
4NOG_PLP_A_501	100%	40%	0.042	0.992	1.24	1.18	3	1	0	0	100%	1
3WQC_PLP_B_402	100%	23%	0.045	0.993	1.94	1.38	4	4	0	0	100%	0.9375
4HT3_PLP_B_401	100%	17%	0.045	0.993	2.04	1.72	3	5	0	0	100%	0.9375
1JF9_PLP_A_500	100%	14%	0.047	0.994	1.28	2.78	1	11	0	0	100%	0.9375

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.