Ligand validation:6D5P

XYP: beta-D-xylopyranose

XYP is a Ligand Of Interest in 6D5P designated by the RCSB

	Best-fitted instance in this entry
	Other instances in this entry

	Best-fitted instance in this entry
	Best-fitted PDB instances with same target (top 5)

	Best-fitted instance in this entry
	Best-fitted PDB instances with different target (top 5)

Identifier	Ranking for goodness of fit	Ranking for geometry	Real space R factor	Real space correlation coefficient	RMSZ-bond-length	RMSZ-bond-angle	Outliers of bond length	Outliers of bond angle	Atomic clashes	Stereochemical errors	Model completeness	Average occupancy
6D5P_XYP_A_408	23%	30%	0.261	0.884	1.86	1.06	3	1	0	0	100%	0.96
6D5P_XYP_A_409	3%	30%	0.405	0.72	1.97	0.95	3	1	0	0	100%	0.99
6D5P_XYP_A_410	0%	35%	0.534	0.569	1.95	0.72	3	-	0	0	100%	0.9
5UUB_XYP_A_419	71%	25%	0.093	0.913	2.11	1.14	2	-	0	0	100%	0.837
6N4W_XYP_A_414	69%	37%	0.118	0.933	1.76	0.79	3	-	0	0	100%	0.781
5UN3_XYP_A_355	62%	30%	0.108	0.901	1.98	0.94	2	1	1	0	100%	0.876
6N4Z_XYP_A_413	60%	41%	0.127	0.913	1.81	0.55	3	-	0	0	100%	0.776
5UUA_XYP_A_416	59%	38%	0.125	0.906	1.54	0.98	1	1	0	0	100%	0.86
1OD8_XYP_A_1311	100%	63%	0.047	0.992	0.75	0.64	-	-	0	0	100%	1
1V0M_XYP_A_1304	99%	70%	0.035	0.993	0.82	0.33	-	-	0	0	90%	0.9
1V0N_XYP_A_1306	98%	59%	0.048	0.989	0.76	0.78	-	-	0	0	90%	0.9
1V0L_XYP_A_1305	98%	71%	0.055	0.992	0.52	0.57	-	-	0	0	90%	0.9
3C6Q_XYP_C_500	92%	32%	0.082	0.972	1.82	0.99	1	1	0	0	100%	1

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.