Ligand validation:5Y2M

NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose

NAG is a Ligand Of Interest in 5Y2M designated by the RCSB

	Best-fitted instance in this entry
	Other instances in this entry

	Best-fitted instance in this entry
	Best-fitted PDB instances with same target (top 5)

	Best-fitted instance in this entry
	Best-fitted PDB instances with different target (top 5)

Identifier	Ranking for goodness of fit	Ranking for geometry	Real space R factor	Real space correlation coefficient	RMSZ-bond-length	RMSZ-bond-angle	Outliers of bond length	Outliers of bond angle	Atomic clashes	Stereochemical errors	Model completeness	Average occupancy
5Y2M_NAG_A_602	9%	74%	0.29	0.786	0.29	0.69	-	1	0	0	100%	0.9333
5Y2M_NAG_B_601	9%	88%	0.34	0.827	0.35	0.32	-	-	0	0	100%	0.9333
5Y2M_NAG_B_602	7%	83%	0.326	0.778	0.29	0.48	-	-	0	0	100%	0.9333
5Y2M_NAG_C_602	7%	89%	0.37	0.817	0.22	0.43	-	-	0	0	100%	0.9333
5Y2M_NAG_C_601	5%	86%	0.373	0.787	0.4	0.31	-	-	0	0	100%	0.9333
5Y2M_NAG_A_601	2%	89%	0.414	0.649	0.28	0.36	-	-	0	0	100%	0.9333
5XL4_NAG_B_602	81%	78%	0.083	0.934	0.18	0.69	-	1	1	0	100%	0.9333
5XL3_NAG_B_602	80%	78%	0.096	0.945	0.36	0.52	-	-	2	0	100%	0.9333
5XL7_NAG_A_602	78%	60%	0.098	0.94	0.49	1.01	-	1	0	0	100%	0.9333
5XLB_NAG_B_602	77%	76%	0.114	0.954	0.38	0.54	-	-	0	0	100%	0.9333
5XL1_NAG_A_602	76%	74%	0.11	0.946	0.29	0.7	-	1	1	0	100%	0.9333
1OC7_NAG_A_500	100%	60%	0.04	0.991	0.61	0.9	-	1	0	0	100%	0.9333
1OC6_NAG_A_500	100%	67%	0.041	0.988	0.46	0.8	-	1	0	0	100%	0.9333
1UWC_NAG_A_262	100%	54%	0.046	0.99	0.81	0.95	-	-	0	0	100%	0.9333
6ZE6_NAG_B_703	99%	52%	0.044	0.984	0.78	1.07	-	2	0	0	100%	0.8667
6ZE2_NAG_B_704	99%	56%	0.042	0.979	0.73	0.95	-	1	0	0	100%	0.9333

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.