UDP: URIDINE-5'-DIPHOSPHATE
UDP is a Ligand Of Interest in 5VNC designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 5VNC_UDP_C_802 | 87% | 26% | 0.075 | 0.952 | 1.17 | 1.73 | 3 | 9 | 1 | 0 | 100% | 1 |
| 5VNC_UDP_A_801 | 64% | 28% | 0.087 | 0.884 | 1.2 | 1.6 | 3 | 6 | 0 | 0 | 100% | 1 |
| 5VNC_UDP_D_801 | 63% | 27% | 0.094 | 0.887 | 1.26 | 1.6 | 4 | 5 | 0 | 0 | 100% | 1 |
| 5VNC_UDP_B_801 | 23% | 25% | 0.149 | 0.773 | 1.33 | 1.61 | 4 | 4 | 0 | 0 | 100% | 1 |
| 5SUL_UDP_A_801 | 100% | 27% | 0.032 | 0.994 | 1.05 | 1.78 | 1 | 6 | 5 | 0 | 100% | 1 |
| 5UW4_UDP_C_802 | 97% | 24% | 0.053 | 0.974 | 1.19 | 1.79 | 4 | 9 | 1 | 0 | 100% | 1 |
| 4KQM_UDP_C_803 | 92% | 27% | 0.063 | 0.961 | 1.03 | 1.79 | - | 8 | 3 | 0 | 100% | 1 |
| 3O3C_UDP_A_901 | 88% | 29% | 0.067 | 0.949 | 1.14 | 1.61 | 2 | 5 | 2 | 0 | 100% | 1 |
| 5UW0_UDP_D_801 | 68% | 28% | 0.092 | 0.904 | 1.16 | 1.63 | 3 | 5 | 0 | 0 | 100% | 1 |
| 5F87_UDP_A_501 | 100% | 29% | 0.013 | 0.999 | 1.18 | 1.54 | 2 | 4 | 2 | 0 | 100% | 1 |
| 5V0T_UDP_B_501 | 100% | 69% | 0.014 | 0.999 | 0.43 | 0.61 | - | 1 | 0 | 0 | 100% | 1 |
| 7FGA_UDP_D_401 | 100% | 2% | 0.014 | 0.999 | 3.6 | 2.79 | 15 | 12 | 2 | 0 | 100% | 1 |
| 8X3Q_UDP_D_401 | 100% | 3% | 0.013 | 0.999 | 3.5 | 2.77 | 14 | 14 | 0 | 0 | 100% | 1 |
| 8X3U_UDP_B_401 | 100% | 3% | 0.012 | 0.999 | 3.51 | 2.73 | 14 | 12 | 2 | 0 | 100% | 1 |
