SPM: SPERMINE
SPM is a Ligand Of Interest in 5VJ9 designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
| 5VJ9_SPM_C_102 | 41% | 49% | 0.15 | 0.866 | 0.41 | 1.41 | - | 1 | 0 | 0 | 100% | 1 |
| 5VJ9_SPM_D_102 | 40% | 64% | 0.168 | 0.881 | 0.38 | 0.82 | - | - | 1 | 0 | 100% | 1 |
| 5VJ9_SPM_A_102 | 32% | 40% | 0.173 | 0.85 | 0.53 | 1.67 | - | 3 | 5 | 0 | 100% | 1 |
| 5VJ9_SPM_B_104 | 28% | 48% | 0.146 | 0.88 | 0.88 | 1.03 | - | 1 | 0 | 0 | 57% | 1 |
| 5VJ9_SPM_B_103 | 23% | 62% | 0.17 | 0.852 | 0.35 | 0.92 | - | 1 | 0 | 0 | 71% | 1 |
| 3C6M_SPM_D_501 | 100% | 59% | 0.032 | 0.994 | 0.33 | 1.06 | - | - | 7 | 0 | 100% | 1 |
| 6E1X_SPM_C_201 | 100% | 54% | 0.032 | 0.993 | 0.56 | 1.06 | - | - | 2 | 0 | 100% | 1 |
| 8OEX_SPM_A_101 | 99% | 70% | 0.04 | 0.981 | 0.47 | 0.55 | - | - | 0 | 0 | 100% | 1 |
| 6AF2_SPM_D_201 | 98% | 65% | 0.055 | 0.991 | 0.33 | 0.85 | - | - | 0 | 0 | 100% | 1 |
| 1ICK_SPM_A_21 | 98% | 4% | 0.048 | 0.977 | 2.78 | 2.85 | 1 | 3 | 5 | 0 | 100% | 0.82 |