UDP: URIDINE-5'-DIPHOSPHATE
UDP is a Ligand Of Interest in 5TVG designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
| 5TVG_UDP_G_501 | 77% | 71% | 0.113 | 0.957 | 0.33 | 0.65 | - | 1 | 0 | 0 | 100% | 1 |
| 5TVG_UDP_B_501 | 74% | 73% | 0.13 | 0.967 | 0.28 | 0.64 | - | 1 | 1 | 0 | 100% | 1 |
| 5TVG_UDP_D_501 | 74% | 75% | 0.127 | 0.961 | 0.42 | 0.46 | - | - | 0 | 0 | 100% | 1 |
| 5TVG_UDP_F_501 | 70% | 71% | 0.141 | 0.965 | 0.36 | 0.61 | - | 1 | 0 | 0 | 100% | 1 |
| 5TVG_UDP_E_501 | 70% | 66% | 0.138 | 0.959 | 0.51 | 0.65 | - | 1 | 0 | 0 | 100% | 1 |
| 5TVG_UDP_A_501 | 65% | 60% | 0.16 | 0.968 | 0.49 | 0.89 | - | 1 | 0 | 0 | 100% | 1 |
| 5TVG_UDP_C_501 | 65% | 68% | 0.154 | 0.961 | 0.43 | 0.64 | - | 1 | 1 | 0 | 100% | 1 |
| 5TVG_UDP_H_501 | 50% | 63% | 0.163 | 0.914 | 0.53 | 0.74 | - | 2 | 0 | 0 | 100% | 1 |
| 8X3Q_UDP_D_401 | 100% | 3% | 0.013 | 0.999 | 3.3 | 2.73 | 13 | 14 | 0 | 0 | 100% | 1 |
| 8X3U_UDP_B_401 | 100% | 3% | 0.012 | 0.999 | 3.31 | 2.68 | 13 | 13 | 2 | 0 | 100% | 1 |
| 8VH8_UDP_B_704 | 100% | 57% | 0.03 | 0.994 | 0.59 | 0.91 | - | 1 | 0 | 0 | 100% | 1 |
| 2B69_UDP_A_900 | 100% | 40% | 0.032 | 0.992 | 1.03 | 1.21 | 2 | 4 | 0 | 0 | 100% | 1 |
| 3H4T_UDP_A_604 | 99% | 40% | 0.039 | 0.99 | 1.01 | 1.22 | 2 | 3 | 0 | 0 | 100% | 1 |