UDP: URIDINE-5'-DIPHOSPHATE
UDP is a Ligand Of Interest in 5TME designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 5TME_UDP_A_501 | 53% | 7% | 0.101 | 0.859 | 2.74 | 2.03 | 10 | 12 | 0 | 0 | 100% | 1 |
| 6BK2_UDP_A_501 | 99% | 26% | 0.042 | 0.984 | 1.29 | 1.61 | 5 | 8 | 0 | 0 | 100% | 1 |
| 6BK0_UDP_A_501 | 96% | 14% | 0.058 | 0.974 | 1.58 | 2.15 | 3 | 9 | 2 | 0 | 100% | 1 |
| 5TMB_UDP_A_501 | 95% | 33% | 0.062 | 0.972 | 0.93 | 1.58 | 1 | 5 | 0 | 0 | 100% | 1 |
| 6BK1_UDP_A_501 | 66% | 3% | 0.099 | 0.903 | 2.05 | 3.93 | 8 | 15 | 2 | 0 | 100% | 1 |
| 6BK3_UDP_A_501 | 33% | 20% | 0.131 | 0.808 | 1.47 | 1.77 | 3 | 9 | 2 | 0 | 100% | 1 |
| 5F87_UDP_A_501 | 100% | 29% | 0.013 | 0.999 | 1.18 | 1.54 | 2 | 4 | 2 | 0 | 100% | 1 |
| 5V0T_UDP_B_501 | 100% | 69% | 0.014 | 0.999 | 0.43 | 0.61 | - | 1 | 0 | 0 | 100% | 1 |
| 7FGA_UDP_D_401 | 100% | 2% | 0.014 | 0.999 | 3.6 | 2.79 | 15 | 12 | 2 | 0 | 100% | 1 |
| 8X3Q_UDP_D_401 | 100% | 3% | 0.013 | 0.999 | 3.5 | 2.77 | 14 | 14 | 0 | 0 | 100% | 1 |
| 8X3U_UDP_B_401 | 100% | 3% | 0.012 | 0.999 | 3.51 | 2.73 | 14 | 12 | 2 | 0 | 100% | 1 |
