GDU: GALACTOSE-URIDINE-5'-DIPHOSPHATE
GDU is a Ligand Of Interest in 5NRD designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
5NRD_GDU_B_402 | 39% | 88% | 0.181 | 0.889 | 0.28 | 0.39 | - | - | 0 | 0 | 100% | 0.74 |
5NRD_GDU_A_403 | 18% | 70% | 0.225 | 0.809 | 0.33 | 0.78 | - | 2 | 2 | 0 | 100% | 0.74 |
4HO9_GDU_B_300 | 99% | 27% | 0.05 | 0.983 | 1.38 | 1.71 | 4 | 9 | 0 | 0 | 100% | 1 |
6GX0_GDU_A_402 | 97% | 48% | 0.067 | 0.98 | 0.81 | 1.22 | 1 | 6 | 0 | 0 | 100% | 0.6 |
5M7D_GDU_A_402 | 96% | 44% | 0.071 | 0.983 | 0.91 | 1.29 | 1 | 5 | 0 | 0 | 100% | 1 |
7YS9_GDU_A_404 | 91% | 77% | 0.087 | 0.974 | 0.39 | 0.51 | - | 1 | 1 | 0 | 100% | 0.4 |
4LW3_GDU_A_402 | 89% | 13% | 0.104 | 0.983 | 2.67 | 1.52 | 15 | 10 | 0 | 0 | 100% | 1 |